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sequence analysis

"Exploring karyotype diversity of Argentinian Guaranímaize landraces: Relationship among South American maize" (2018) Realini, M.F.; Poggio, L.; Hernández, J.C.; González, G.E. PLoS ONE. 13(6)

"The benefits of analysing complete mitochondrial genomes: Deep insights into the phylogeny and population structure of Echinococcus granulosus sensu lato genotypes G6 and G7" (2018) Laurimäe, T.;Kinkar, L.;Romig, T. (...)Saarma, U. Infection, Genetics and Evolution. 64:85-94

"Characterization and comparative analysis of the genome of Puccinia sorghi Schwein, the causal agent of maize common rust" (2018) Rochi, L.;Diéguez, M.J.;Burguener, G. (...)Sacco, F. Fungal Genetics and Biology. 112:31-39

"Degenerate cysteine patterns mediate two redox sensing mechanisms in the papillomavirus E7 oncoprotein" (2017) Camporeale, G.;Lorenzo, J.R.;Thomas, M.G. (...)Alonso, L.G. Redox Biology. 11:38-50

"Identification of cross-reactive B-cell epitopes between Bos d 9.0101(Bos Taurus) and Gly m 5.0101 (Glycine max) by epitope mapping MALDI-TOF MS" (2017) Candreva, Á.M.;Ferrer-Navarro, M.;Bronsoms, S. (...)Trejo, S.A. Proteomics. 17(15-16)

"Evolution of the Rax family of developmental transcription factors in vertebrates" (2017) Orquera, D.P.; de Souza, F.S.J. Mechanisms of Development. 144:163-170

"The Phosphatidylinositol 3-kinase Class III Complex Containing TcVps15 and TcVps34 Participates in Autophagy in Trypanosoma cruzi" (2017) Schoijet, A.C.; Sternlieb, T.; Alonso, G.D. Journal of Eukaryotic Microbiology. 64(3):308-321

"Sequencing of small RNAs of the fern Pleopeltis minima (Polypodiaceae) offers insight into the evolution of the microrna repertoire in land plants" (2017) Berruezo, F.;De Souza, F.S.J.;Picca, P.I. (...)Zelada, A.M. PLoS ONE. 12(5)

"Distinct ErbB2 receptor populations differentially interact with beta1 integrin in breast cancer cell models" (2017) Toscani, A.M.;Sampayo, R.G.;Barabas, F.M. (...)Leskow, F.C. PLoS ONE. 12(3)

"Germline and somatic mutations in cortical malformations: Molecular defects in Argentinean patients with neuronal migration disorders" (2017) González-Morón, D.;Vishnopolska, S.;Consalvo, D. (...)Kauffman, M.A. PLoS ONE. 12(9)

"Inferring repeat-protein energetics from evolutionary information" (2017) Espada, R.;Parra, R.G.;Mora, T. (...)Ferreiro, D.U. PLoS Computational Biology. 13(6)

"A Multilayer Network Approach for Guiding Drug Repositioning in Neglected Diseases" (2016) Berenstein, A.J.; Magariños, M.P.; Chernomoretz, A.; Agüero, F. PLoS Neglected Tropical Diseases. 10(1)

"Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics" (2016) Parra, R.G.;Schafer, N.P.;Radusky, L.G. (...)Ferreiro, D.U. Nucleic acids research. 44(W1):W356-W360

"Heme oxygenase-1 in the forefront of a multi-molecular network that governs cell-cell contacts and filopodia-induced zippering in prostate cancer" (2016) Paez, A.V.;Pallavicini, C.;Schuster, F. (...)Gueron, G. Cell death & disease. 7(12):e2570

"Mitochondrial genome architecture in non-alcoholic fatty liver disease" (2016) Sookoian, S.;Flichman, D.;Scian, R. (...)Pirola, C.J. Journal of Pathology. 240(4):437-449

"Xanthomonas campestris attenuates virulence by sensing light through a bacteriophytochrome photoreceptor" (2016) Bonomi, H.R.;Toum, L.;Sycz, G. (...)Malamud, F. EMBO Reports. 17(11):1565-1577

"Novel essential role of ethanol oxidation genes at low temperature revealed by transcriptome analysis in the antarctic bacterium pseudomonas extremaustralis" (2015) Tribelli, P.M.;Venero, E.C.S.;Ricardi, M.M. (...)López, N.I. PLoS ONE. 10(12)

"Prediction of spontaneous protein deamidation from sequence-derived secondary structure and intrinsic disorder" (2015) Lorenzo, J.R.; Alonso, L.G.; Sánchez, I.E. PLoS ONE. 10(12)

"Convergent evolution and mimicry of protein linear motifs in host-pathogen interactions" (2015) Chemes, L.B.; de Prat-Gay, G.; Sánchez, I.E. Current Opinion in Structural Biology. 32:91-101

"Whole genome sequencing reveals a de novo SHANK3 mutation in familial autism spectrum disorder" (2015) Nemirovsky, S.I.;Córdoba, M.;Zaiat, J.J. (...)Kauffman, M.A. PLoS ONE. 10(2)

"New sequence variations in spermatogenesis candidates genes" (2015) Poli, M.N.;Iriarte, P.F.;Iudica, C. (...)Coco, R. Jornal Brasileiro de Reproducao Assistida. 19(4):216-222

"The estrogen receptor alpha nuclear localization sequence is critical for fulvestrant-induced degradation of the receptor" (2015) Casa, A.J.;Hochbaum, D.;Sreekumar, S. (...)Lee, A.V. Molecular and Cellular Endocrinology. 415:76-86

"Structural and Energetic Characterization of the Ankyrin Repeat Protein Family" (2015) Parra, R.G.; Espada, R.; Verstraete, N.; Ferreiro, D.U. PLoS Computational Biology. 11(12)

"A Mycobacterium tuberculosis Dormancy Antigen Differentiates Latently Infected Bacillus Calmette-Guérin-vaccinated Individuals" (2015) Peña, D.;Rovetta, A.I.;Hernández Del Pino, R.E. (...)García, V.E. EBioMedicine. 2(8):884-890

"Baseline HIV-1 resistance, virological outcomes, and emergent resistance in the SECOND-LINE trial: An exploratory analysis" (2015) Boyd, M.A.;Moore, C.L.;Molina, J.-M. (...)Cooper, D.A. The Lancet HIV. 2(2):e42-e51

"A novel missense mutation in the HSD3B2 gene, underlying nonsalt-wasting congenital adrenal hyperplasia. New insight into the structurefunction relationships of 3βhydroxysteroid dehidrogenase type II" (2015) Baquedano, M.S.;Ciaccio, M.;Marino, R. (...)Belgorosky, A. Journal of Clinical Endocrinology and Metabolism. 100(1):E191-E196

"Protein Topology Determines Cysteine Oxidation Fate: The Case of Sulfenyl Amide Formation among Protein Families" (2015) Defelipe, L.A.;Lanzarotti, E.;Gauto, D. (...)Turjanski, A.G. PLoS Computational Biology. 11(3)

"Identification of novel cyclic nucleotide binding proteins in Trypanosoma cruzi" (2014) Jäger, A.V.;De Gaudenzi, J.G.;Mild, J.G. (...)Edreira, M.M. Molecular and Biochemical Parasitology. 198(2):104-112

"Response to long-term NaHCO3-derived alkalinity in model Lotus japonicus ecotypes Gifu B-129 and Miyakojima MG-20: Transcriptomic profiling and physiological characterization" (2014) Babuin, M.F.;Campestre, M.P.;Rocco, R. (...)Menendez, A.B. PLoS ONE. 9(5)

"The Immediately Releasable Pool of Mouse Chromaffin Cell Vesicles Is Coupled to P/Q-Type Calcium Channels via the Synaptic Protein Interaction Site" (2013) Álvarez, Y.D.;Belingheri, A.V.;Perez Bay, A.E. (...)Marengo, F.D. PLoS ONE. 8(1)

"De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba" (2013) Torales, S.L.;Rivarola, M.;Pomponio, M.F. (...)Poltri, S.N.M. BMC Genomics. 14(1)

"First description of natural Ehrlichia canis and Anaplasma platys infections in dogs from Argentina" (2013) Eiras, D.F.;Craviotto, M.B.;Vezzani, D. (...)Baneth, G. Comparative Immunology, Microbiology and Infectious Diseases. 36(2):169-173

"A first insight into pycnoporus sanguineus BAFC 2126 transcriptome" (2013) Rohr, C.O.; Levin, L.N.; Mentaberry, A.N.; Wirth, S.A. PLoS ONE. 8(12)

"Loop A Is Critical for the Functional Interaction of Two Beta vulgaris PIP Aquaporins" (2013) Jozefkowicz, C.;Rosi, P.;Sigaut, L. (...)Alleva, K. PLoS ONE. 8(3)

"Bacterial Indicator of Agricultural Management for Soil under No-Till Crop Production" (2012) Figuerola, E.L.M.;Guerrero, L.D.;Rosa, S.M. (...)Erijman, L. PLoS ONE. 7(11)

"Trichinella patagoniensis n. sp. (Nematoda), a new encapsulated species infecting carnivorous mammals in South America" (2012) Krivokapich, S.J.;Pozio, E.;Gatti, G.M. (...)Confalonieri, V. International Journal for Parasitology. 42(10):903-910

"Identification of Corynebacterium pseudotuberculosis from sheep by PCR-restriction analysis using the RNA polymerase β-subunit gene (rpoB)" (2012) Pavan, M.E.;Robles, C.;Cairó, F.M. (...)Pettinari, M.J. Research in Veterinary Science. 92(2):202-206

"New insight into the evolution of aquaporins from flowering plants and vertebrates: Orthologous identification and functional transfer is possible" (2012) Soto, G.;Alleva, K.;Amodeo, G. (...)Ayub, N.D. Gene. 503(1):165-176

"Development, Characterization and Experimental Validation of a Cultivated Sunflower (Helianthus annuus L.) Gene Expression Oligonucleotide Microarray" (2012) Fernandez, P.;Soria, M.;Blesa, D. (...)Paniego, N. PLoS ONE. 7(10)

"Biodiversity characterization of cellulolytic bacteria present on native Chaco soil by comparison of ribosomal RNA genes" (2012) Talia, P.;Sede, S.M.;Campos, E. (...)Cataldi, A. Research in Microbiology. 163(3):221-232

"Inhibition of Cell Division Induced by External Guide Sequences (EGS Technology) Targeting ftsZ" (2012) Sala, C.D.;Soler-Bistué, A.J.C.;Korprapun, L. (...)Tolmasky, M.E. PLoS ONE. 7(10)

"Sequence Evolution of the Intrinsically Disordered and Globular Domains of a Model Viral Oncoprotein" (2012) Chemes, L.B.;Glavina, J.;Alonso, L.G. (...)Sánchez, I.E. PLoS ONE. 7(10)

"Lysine transporters in human trypanosomatid pathogens" (2012) Inbar, E.;Canepa, G.E.;Carrillo, C. (...)Pereira, C.A. Amino Acids. 42(1):347-360

"Isolation and identification of α-proteobacteria from Culex pipiens (Diptera Culicidae) larvae" (2012) Tranchida, M.C.;Riccillo, P.M.;Rodriguero, M.S. (...)Micieli, M.V. Journal of Invertebrate Pathology. 109(1):143-147

"Detection of single copy sequences using BAC-FISH and C-PRINS techniques in sunflower chromosomes" (2011) Talia, P.;Greizerstein, E.J.;Hopp, H.E. (...)Heinz, R.A. Biocell. 35(1):19-28

"Mutations in two putative phosphorylation motifs in the tomato pollen receptor kinase LePRK2 show antagonistic effects on pollen tube length" (2011) Salem, T.;Mazzella, A.;Barberini, M.L. (...)Muschietti, J. Journal of Biological Chemistry. 286(6):4882-4891

"Structure-based analysis of five novel disease-causing mutations in 21-hydroxylase-deficient patients" (2011) Minutolo, C.;Nadra, A.D.;Fernández, C. (...)Dain, L. PLoS ONE. 6(1)

"Genotyping of Leptospira interrogans strains from Argentina by Multiple-Locus Variable-number tandem repeat Analysis (MLVA)" (2011) Pavan, M.E.;Cairó, F.;Pettinari, M.J. (...)Brihuega, B. Comparative Immunology, Microbiology and Infectious Diseases. 34(2):135-141

"An integrated computational analysis of the structure, dynamics, and ligand binding interactions of the human galectin network" (2011) Guardia, C.M.A.;Gauto, D.F.;Di Lella, S. (...)Estrin, D.A. Journal of Chemical Information and Modeling. 51(8):1918-1930

"Prestin and the cholinergic receptor of hair cells: Positively-selected proteins in mammals" (2011) Elgoyhen, A.B.; Franchini, L.F. Hearing Research. 273(1-2):100-108

"Human recombinant antibodies against Trypanosoma cruzi ribosomal P2β protein" (2011) Grippo, V.; Niborski, L.L.; Gomez, K.A.; Levin, M.J. Parasitology. 138(6):736-747

"Trypanosoma cruzi I genotypes in different geographical regions and transmission cycles based on a microsatellite motif of the intergenic spacer of spliced-leader genes" (2010) Cura, C.I.;Mejía-Jaramillo, A.M.;Duffy, T. (...)Schijman, A.G. International Journal for Parasitology. 40(14):1599-1607

"Introducing transcription" (2010) Kornblihtt, A.R. Transcription. 1(1):1

"Geographical clustering of Trypanosoma cruzi I groups from Colombia revealed by low-stringency single specific primer-PCR of the intergenic regions of spliced-leader genes" (2009) Mejía-Jaramillo, A.M.;Arboleda-Sánchez, S.;Rodríguez, I.B. (...)Schijman, A.G. Parasitology Research. 104(2):399-410

"Presence of β-follicle-stimulating hormone and β-luteinizing hormone transcripts in the brain of Cichlasoma dimerus (Perciformes: Cichlidae): Effect of brain-derived gonadotropins on pituitary hormone release" (2009) Pandolfi, M.;Pozzi, A.G.;Cánepa, M. (...)Lobo, G. Neuroendocrinology. 89(1):27-37

"TcPARP: A DNA damage-dependent poly(ADP-ribose) polymerase from Trypanosoma cruzi" (2008) Fernández Villamil, S.H.;Baltanás, R.;Alonso, G.D. (...)Flawiá, M.M. International Journal for Parasitology. 38(3-4):277-287

"A Trypanosoma cruzi phosphatidylinositol 3-kinase (TcVps34) is involved in osmoregulation and receptor-mediated endocytosis" (2008) Schoijet, A.C.;Miranda, K.;Girard-Dias, W. (...)Alonso, G.D. Journal of Biological Chemistry. 283(46):31541-31550

"Participation of cysteine-rich secretory proteins (CRISP) in mammalian sperm-egg interaction" (2008) Cohen, D.J.;Busso, D.;Da Ros, V. (...)Cuasnicu, P.S. International Journal of Developmental Biology. 52(5-6):737-742

"Role of versican and hyaluronan in the differentiation of 3T3-L1 cells into preadipocytes and mature adipocytes" (2007) Zizola, C.F.;Julianelli, V.;Bertolesi, G. (...)Calvo, J.C. Matrix Biology. 26(6):419-430

"Transcriptional regulation of pituitary POMC is conserved at the vertebrate extremes despite great promoter sequence divergence" (2007) Bumaschny, V.F.;De Souza, F.S.J.;Leal, R.A.L. (...)Rubinstein, M. Molecular Endocrinology. 21(11):2738-2749

"Microsatellite typing of ancient maize: Insights into the history of agriculture in southern South America" (2007) Lia, V.V.;Confalonieri, V.A.;Ratto, N. (...)Brown, T.A. Proceedings of the Royal Society B: Biological Sciences. 274(1609):545-554

"Cloning of hif-1α and hif-2α and mRNA expression pattern during development in zebrafish" (2007) Rojas, D.A.;Perez-Munizaga, D.A.;Centanin, L. (...)Reyes, A.E. Gene Expression Patterns. 7(3):339-345

"Functional activation by central monoamines of human dopamine D4 receptor polymorphic variants coupled to GIRK channels in Xenopus oocytes" (2007) Wedemeyer, C.;Goutman, J.D.;Avale, M.E. (...)Calvo, D.J. European Journal of Pharmacology. 562(3):165-173

"Cell growth-dependent subcellular localization of p8" (2006) Valacco, M.P.;Varone, C.;Malicet, C. (...)Moreno, S. Journal of Cellular Biochemistry. 97(5):1066-1079

"TcPDE4, a novel membrane-associated cAMP-specific phosphodiesterase from Trypanosoma cruzi" (2006) Alonso, G.D.; Schoijet, A.C.; Torres, H.N.; Flawiá, M.M. Molecular and Biochemical Parasitology. 145(1):40-49

"Differential detection of Blastocrithidia triatomae and Trypanosoma cruzi by amplification of 24sα ribosomal RNA genes in faeces of sylvatic triatomine species from rural northwestern Argentina" (2006) Schijman, A.G.;Lauricella, M.A.;Marcet, P.L. (...)Gürtler, R.E. Acta Tropica. 99(1):50-54

"Vascular endothelial growth factor (VEGF) production by the monkey corpus luteum during the menstrual cycle: Isoform-selective messenger RNA expression in vivo and hypoxia-regulated protein secretion in vitro" (2005) Tesone, M.;Stouffer, R.L.;Borman, S.M. (...)Molskness, T.A. Biology of Reproduction. 73(5):927-934

"Free energy contributions to direct readout of a DNA sequence" (2005) Ferreiro, D.U.; Dellarole, M.; Nadra, A.D.; De Prat-Gay, G. Journal of Biological Chemistry. 280(37):32480-32484

"The system of galactans from Cryptonemia crenulata (Halymeniaceae, Halymeniales) and the structure of two major fractions. Kinetic studies on the alkaline cyclization of the unusual diad G2S→D(L)6S" (2005) Zibetti, R.G.M.; Noseda, M.D.; Cerezo, A.S.; Duarte, M.E.R. Carbohydrate Research. 340(4):711-722

"The Anp32 family of proteins containing leucine-rich repeats" (2005) Matilla, A.; Radrizzani, M. Cerebellum. 4(1):7-18

"A novel α-conotoxin, PeIA, cloned from Conus pergrandis, discriminates between Rat α9α10 and α7 nicotinic cholinergic receptors" (2005) McIntosh, J.M.;Plazas, P.V.;Watkins, M. (...)Elgoyhen, A.B. Journal of Biological Chemistry. 280(34):30107-30112

"Comparative Molecular Population Genetics of the Xdh Locus in the Cactophilic Sibling Species Drosophila buzzatii and D. koepferae" (2004) Piccinali, R.; Aguadé, M.; Hasson, E. Molecular Biology and Evolution. 21(1):141-152

"Structure analysis of two Toxoplasma gondii and Neospora caninum satellite DNA families and evolution of their common monomeric sequence" (2004) Clemente, M.;De Miguel, N.;Lia, V.V. (...)Angel, S.O. Journal of Molecular Evolution. 58(5):557-567

"A polyhydroxybutyrate-producing Pseudomonas sp. isolated from antarctic environments with high stress resistance" (2004) Ayub, N.D.; Pettinari, M.J.; Ruiz, J.A.; López, N.I. Current Microbiology. 49(3):170-174

"Heterologous expression of a plant arginine decarboxylase gene in Trypanosoma cruzi" (2004) Carrillo, C.;Serra, M.P.;Pereira, C.A. (...)Algranati, I.D. Biochimica et Biophysica Acta - General Subjects. 1674(3):223-230

"Differential representation of sunflower ESTs in enriched organ-specific cDNA libraries in a small scale sequencing project" (2003) Fernández, P.;Paniego, N.;Lew, S. (...)Heinz, R.A. BMC Genomics. 4

"Sequence analysis, expression, and paratope characterization of a single-chain Fv fragment for the eukaryote ribosomal P proteins" (2003) López Bergami, P.;Mateos, P.;Hoebeke, J. (...)Baldi, A. Biochemical and Biophysical Research Communications. 301(4):819-824

"Pathogen DNA as target for host-generated oxidative stress: Role for repair of bacterial DNA damage in Helicobacter pylori colonization" (2003) O'Rourke, E.J.;Chevalier, C.;Pinto, A.V. (...)Radicella, J.P. Proceedings of the National Academy of Sciences of the United States of America. 100(5):2789-2794

"Sequence and phylogenetic analysis of genome segments S1, S2, S3 and S6 of Mal de Río Cuarto virus, a newly accepted Fijivirus species" (2003) Distéfano, A.J.;Conci, L.R.;Muñoz Hidalgo, M. (...)Del Vas, M. Virus Research. 92(1):113-121

"Automated biological sequence description by genetic multiobjective generalized clustering" (2002) Zwir, I.; Zaliz, R.R.; Ruspini, E.H. Annals of the New York Academy of Sciences. 980:65-82

"Existence of a true phosphofructokinase in Bacillus sphaericus: Cloning and sequencing of the pfk gene" (2002) Alice, A.F.; Pérez-Martínez, G.; Sáchez-Rivas, C. Applied and Environmental Microbiology. 68(12):6410-6415

"Recurrent amplifications and deletions of satellite DNA accompanied chromosomal diversification in South American tuco-tucos (genus Ctenomys, Rodentia: Octodontidae): A phylogenetic approach" (2001) Slamovits, C.H.; Cook, J.A.; Lessa, E.P.; Rossi, M.S. Molecular Biology and Evolution. 18(9):1708-1719

"Human p8 Is a HMG-I/Y-like Protein with DNA Binding Activity Enhanced by Phosphorylation" (2001) Encinar, J.A.;Mallo, G.V.;Mizyrycki, C. (...)Iovanna, J.L. Journal of Biological Chemistry. 276(4):2742-2751

"Distinctive cognate sequence discrimination, bound DNA conformation, and binding modes in the E2 C-terminal domains from prototype human and bovine papillomaviruses" (2000) Ferreiro, D.U.;Lima, L.M.T.R.;Nadra, A.D. (...)De Prat-Gay, G. Biochemistry. 39(47):14692-14701

"Relationship between the association of rat epididymal protein 'DE' with spermatozoa and the behavior and function of the protein" (2000) Cohen, D.J.;Rochwerger, L.;Ellerman, D.A. (...)Cuasnicú, P.S. Molecular Reproduction and Development. 56(2):180-188

"New mobilizable vectors suitable for gene replacement in gram-negative bacteria and their use in mapping of the 3' end of the Xanthomonas campestris pv. campestris gum operon" (1999) Katzen, F.;Becker, A.;Ielmini, M.V. (...)Ielpi, L. Applied and Environmental Microbiology. 65(1):278-282

"Factors from Trypanosoma cruzi interacting with AP-1 sequences" (1999) Espinosa, J.;Martinetto, H.;Portal, D. (...)Flawiá, M.M. Journal of Eukaryotic Microbiology. 46(5):516-521

"Cloning of two alternatively spliced 21-hydroxylase CDNAs from rat adrenal" (1997) Zhou, M.-Y.; Del Carmen Vila, M.; Gomez-Sanchez, E.P.; Gomez-Sanchez, C.E. Journal of Steroid Biochemistry and Molecular Biology. 62(4):277-286

"Characterization of an interspersed repetitive DNA element in the genome of Trypanosoma cruzi" (1997) Araya, J.;Cano, M.I.;Gomes, H.B.M. (...)Franco Da Silveira, J. Parasitology. 115(6):563-570