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protein folding
110
"Frustration, function and folding" (2018) Ferreiro, D.U.; Komives, E.A.; Wolynes, P.G. Current Opinion in Structural Biology. 48:68-73
"Frustration, function and folding" (2018) Ferreiro, D.U.; Komives, E.A.; Wolynes, P.G. Current Opinion in Structural Biology. 48:68-73
"Frustration, function and folding" (2018) Ferreiro, D.U.; Komives, E.A.; Wolynes, P.G. Current Opinion in Structural Biology. 48:68-73
"Gene expression regulation by heat-shock proteins: the cardinal roles of HSF1 and Hsp90" (2018) Mazaira, G.I.;Daneri-Becerra, C.;Zgajnar, N.R. (...)Galigniana, M.D. Biochemical Society Transactions. 46(1):51-65
"Gene expression regulation by heat-shock proteins: the cardinal roles of HSF1 and Hsp90" (2018) Mazaira, G.I.;Daneri-Becerra, C.;Zgajnar, N.R. (...)Galigniana, M.D. Biochemical Society Transactions. 46(1):51-65
"Abrogation of glucosidase I–mediated glycoprotein deglucosylation results in a sick phenotype in fission yeasts: Model for the human MOGS-CDG disorder" (2018) Gallo, G.L.;Valko, A.;Aramburu, S.I. (...)D’Alessio, C. Journal of Biological Chemistry. 293(52):19957-19973
"Hidden Structural Codes in Protein Intrinsic Disorder" (2017) Borkosky, S.S.;Camporeale, G.;Chemes, L.B. (...)De Prat Gay, G. Biochemistry. 56(41):5560-5569
"Hidden Structural Codes in Protein Intrinsic Disorder" (2017) Borkosky, S.S.;Camporeale, G.;Chemes, L.B. (...)De Prat Gay, G. Biochemistry. 56(41):5560-5569
"Evolved distal tail carbohydrate binding modules of Lactobacillus phage J-1: a novel type of anti-receptor widespread among lactic acid bacteria phages" (2017) Dieterle, M.-E.;Spinelli, S.;Sadovskaya, I. (...)Cambillau, C. Molecular Microbiology. 104(4):608-620
"Inferring repeat-protein energetics from evolutionary information" (2017) Espada, R.;Parra, R.G.;Mora, T. (...)Ferreiro, D.U. PLoS Computational Biology. 13(6)
"Inferring repeat-protein energetics from evolutionary information" (2017) Espada, R.;Parra, R.G.;Mora, T. (...)Ferreiro, D.U. PLoS Computational Biology. 13(6)
"Evolutionary and Functional Relationships in the Truncated Hemoglobin Family" (2016) Bustamante, J.P.;Radusky, L.;Boechi, L. (...)Martí, M.A. PLoS Computational Biology. 12(1)
"Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics" (2016) Parra, R.G.;Schafer, N.P.;Radusky, L.G. (...)Ferreiro, D.U. Nucleic acids research. 44(W1):W356-W360
"Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics" (2016) Parra, R.G.;Schafer, N.P.;Radusky, L.G. (...)Ferreiro, D.U. Nucleic acids research. 44(W1):W356-W360
"Protein Repeats from First Principles" (2016) Turjanski, P.;Parra, R.G.;Espada, R. (...)Ferreiro, D.U. Scientific Reports. 6
"Protein Repeats from First Principles" (2016) Turjanski, P.;Parra, R.G.;Espada, R. (...)Ferreiro, D.U. Scientific Reports. 6
"Alternative Conformations of Cytochrome c: Structure, Function, and Detection" (2016) Hannibal, L.;Tomasina, F.;Capdevila, D.A. (...)Radi, R. Biochemistry. 55(3):407-428
"Alternative Conformations of Cytochrome c: Structure, Function, and Detection" (2016) Hannibal, L.;Tomasina, F.;Capdevila, D.A. (...)Radi, R. Biochemistry. 55(3):407-428
"Structured and Unstructured Binding of an Intrinsically Disordered Protein as Revealed by Atomistic Simulations" (2016) Ithuralde, R.E.; Roitberg, A.E.; Turjanski, A.G. Journal of the American Chemical Society. 138(28):8742-8751
"Capturing coevolutionary signals inrepeat proteins" (2015) Espada, R.;Parra, R.G.;Mora, T. (...)Ferreiro, D.U. BMC Bioinformatics. 16(1)
"Capturing coevolutionary signals inrepeat proteins" (2015) Espada, R.;Parra, R.G.;Mora, T. (...)Ferreiro, D.U. BMC Bioinformatics. 16(1)
"The E. Coli thioredoxin folding mechanism: The key role of the C-terminal helix" (2015) Vazquez, D.S.;Sánchez, I.E.;Garrote, A. (...)Santos, J. Biochimica et Biophysica Acta - Proteins and Proteomics. 1854(2):127-137
"The E. Coli thioredoxin folding mechanism: The key role of the C-terminal helix" (2015) Vazquez, D.S.;Sánchez, I.E.;Garrote, A. (...)Santos, J. Biochimica et Biophysica Acta - Proteins and Proteomics. 1854(2):127-137
"Repeat proteins challenge the concept of structural domains" (2015) Espada, R.;Parra, R.G.;Sippl, M.J. (...)Ferreiro, D.U. Biochemical Society Transactions. 43:844-849
"Repeat proteins challenge the concept of structural domains" (2015) Espada, R.;Parra, R.G.;Sippl, M.J. (...)Ferreiro, D.U. Biochemical Society Transactions. 43:844-849
"A phasin with extra talents: A polyhydroxyalkanoate granule-associated protein has chaperone activity" (2015) Mezzina, M.P.;Wetzler, D.E.;de Almeida, A. (...)Pettinari, M.J. Environmental Microbiology. 17(5):1765-1776
"A phasin with extra talents: A polyhydroxyalkanoate granule-associated protein has chaperone activity" (2015) Mezzina, M.P.;Wetzler, D.E.;de Almeida, A. (...)Pettinari, M.J. Environmental Microbiology. 17(5):1765-1776
"Protein Topology Determines Cysteine Oxidation Fate: The Case of Sulfenyl Amide Formation among Protein Families" (2015) Defelipe, L.A.;Lanzarotti, E.;Gauto, D. (...)Turjanski, A.G. PLoS Computational Biology. 11(3)
"Molecular chaperone activity and biological regulatory actions of the TPR-domain immunophilins FKBP51 and FKBP52" (2014) Erlejman, A.G.;Lagadari, M.;Harris, D.C. (...)Galigniana, M.D. Current Protein and Peptide Science. 15(3):205-215
"Molecular chaperone activity and biological regulatory actions of the TPR-domain immunophilins FKBP51 and FKBP52" (2014) Erlejman, A.G.;Lagadari, M.;Harris, D.C. (...)Galigniana, M.D. Current Protein and Peptide Science. 15(3):205-215
"The biology of molecular chaperones - very complex activities for quite simple proteins" (2014) Galigniana, M.D. Current Protein and Peptide Science. 15(3):169-170
"Folding of a cyclin box: Linking multitarget binding to marginal stability, oligomerization, and aggregation of the retinoblastoma tumor suppressor ab pocket domain" (2013) Chemes, L.B.; Noval, M.G.; Sánchez, I.E.; De Prat-Gay, G. Journal of Biological Chemistry. 288(26):18923-18938
"Folding of a cyclin box: Linking multitarget binding to marginal stability, oligomerization, and aggregation of the retinoblastoma tumor suppressor ab pocket domain" (2013) Chemes, L.B.; Noval, M.G.; Sánchez, I.E.; De Prat-Gay, G. Journal of Biological Chemistry. 288(26):18923-18938
"Folding of a cyclin box: Linking multitarget binding to marginal stability, oligomerization, and aggregation of the retinoblastoma tumor suppressor ab pocket domain" (2013) Chemes, L.B.; Noval, M.G.; Sánchez, I.E.; De Prat-Gay, G. Journal of Biological Chemistry. 288(26):18923-18938
"Progesterone regulates the expression and activity of two mouse isoforms of the glycoprotein folding sensor UDP-Glc: Glycoprotein glucosyltransferase (UGGT)" (2013) Prados, M.B.; Caramelo, J.J.; Miranda, S.E. Biochimica et Biophysica Acta - Molecular Cell Research. 1833(12):3368-3374
"Hsp90-binding immunophilins as a potential new platform for drug treatment" (2013) Erlejman, A.G.; Lagadari, M.; Galigniana, M.D. Future Medicinal Chemistry. 5(5):591-607
"Minute time scale prolyl isomerization governs antibody recognition of an intrinsically disordered immunodominant epitope" (2013) Fassolari, M.;Chemes, L.B.;Gallo, M. (...)De Prat-Gay, G. Journal of Biological Chemistry. 288(18):13110-13123
"RapA2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides" (2013) Abdian, P.L.; Caramelo, J.J.; Ausmees, N.; Zorreguieta, A. Journal of Biological Chemistry. 288(4):2893-2904
"Electrostatically driven second-sphere ligand switch between high and low reorganization energy forms of native cytochrome c" (2013) Alvarez-Paggi, D.;Castro, M.A.;Tórtora, V. (...)Murgida, D.H. Journal of the American Chemical Society. 135(11):4389-4397
"Detecting repetitions and periodicities in proteins by tiling the structural space" (2013) Parra, R.G.;Espada, R.;Sánchez, I.E. (...)Ferreiro, D.U. Journal of Physical Chemistry B. 117(42):12887-12897
"Detecting repetitions and periodicities in proteins by tiling the structural space" (2013) Parra, R.G.;Espada, R.;Sánchez, I.E. (...)Ferreiro, D.U. Journal of Physical Chemistry B. 117(42):12887-12897
"Steroid-dependent management of biological responses in the nervous system" (2013) Galigniana, M.D. CNS and Neurological Disorders - Drug Targets. 12(8):1143-1145
"Endocytosis and intracellular dissociation rates of human insulin-insulin receptor complexes by quantum dots in living cells" (2013) Giudice, J.; Jares-Erijman, E.A.; Leskow, F.C. Bioconjugate Chemistry. 24(3):431-442
"Protein frustratometer: A tool to localize energetic frustration in protein molecules" (2012) Jenik, M.;Parra, R.G.;Radusky, L.G. (...)Ferreiro, D.U. Nucleic Acids Research. 40(W1):W348-W351
"Protein Stability and Dynamics Modulation: The Case of Human Frataxin" (2012) Roman, E.A.;Faraj, S.E.;Gallo, M. (...)Santos, J. PLoS ONE. 7(9)
"Protein Stability and Dynamics Modulation: The Case of Human Frataxin" (2012) Roman, E.A.;Faraj, S.E.;Gallo, M. (...)Santos, J. PLoS ONE. 7(9)
"pH-Dependent Conformational Changes in Proteins and Their Effect on Experimental pKas: The Case of Nitrophorin 4" (2012) Di Russo, N.V.; Estrin, D.A.; Martí, M.A.; Roitberg, A.E. PLoS Computational Biology. 8(11)
"An arsenic fluorescent compound as a novel probe to study arsenic-binding proteins" (2012) Femia, A.L.;Temprana, C.F.;Santos, J. (...)Del Alonso, S.V. Protein Journal. 31(8):656-666
"Management of cytoskeleton architecture by molecular chaperones and immunophilins" (2011) Quintá, H.R.;Galigniana, N.M.;Erlejman, A.G. (...)Galigniana, M.D. Cellular Signalling. 23(12):1907-1920
"Mutational analysis of kinetic partitioning in protein folding and protein-DNA binding" (2011) Sánchez, I.E.; Ferreiro, D.U.; De Prat Gay, G. Protein Engineering, Design and Selection. 24(1-2):179-184
"Mutational analysis of kinetic partitioning in protein folding and protein-DNA binding" (2011) Sánchez, I.E.; Ferreiro, D.U.; De Prat Gay, G. Protein Engineering, Design and Selection. 24(1-2):179-184
"Mutational analysis of kinetic partitioning in protein folding and protein-DNA binding" (2011) Sánchez, I.E.; Ferreiro, D.U.; De Prat Gay, G. Protein Engineering, Design and Selection. 24(1-2):179-184
"Mutational analysis of kinetic partitioning in protein folding and protein-DNA binding" (2011) Sánchez, I.E.; Ferreiro, D.U.; De Prat Gay, G. Protein Engineering, Design and Selection. 24(1-2):179-184
"Common themes in RNA subcellular transport, stress granule formation and abnormal protein aggregation" (2011) Benseñor, L.B.; Vazquez, M.S.; Boccaccio, G.L. Current Chemical Biology. 5(2):77-89
"Folding kinetics of the cooperatively folded subdomain of the IκBα ankyrin repeat domain" (2011) Devries, I.; Ferreiro, D.U.; Sánchez, I.E.; Komives, E.A. Journal of Molecular Biology. 408(1):163-176
"Folding kinetics of the cooperatively folded subdomain of the IκBα ankyrin repeat domain" (2011) Devries, I.; Ferreiro, D.U.; Sánchez, I.E.; Komives, E.A. Journal of Molecular Biology. 408(1):163-176
"Folding kinetics of the cooperatively folded subdomain of the IκBα ankyrin repeat domain" (2011) Devries, I.; Ferreiro, D.U.; Sánchez, I.E.; Komives, E.A. Journal of Molecular Biology. 408(1):163-176
"Functional cooperation between BiP and calreticulin in the folding maturation of a glycoprotein in Trypanosoma cruzi" (2011) Labriola, C.A.; Giraldo, A.M.V.; Parodi, A.J.; Caramelo, J.J. Molecular and Biochemical Parasitology. 175(2):112-117
"Functional cooperation between BiP and calreticulin in the folding maturation of a glycoprotein in Trypanosoma cruzi" (2011) Labriola, C.A.; Giraldo, A.M.V.; Parodi, A.J.; Caramelo, J.J. Molecular and Biochemical Parasitology. 175(2):112-117
"FKBP51 and FKBP52 in signaling and disease" (2011) Storer, C.L.;Dickey, C.A.;Galigniana, M.D. (...)Cox, M.B. Trends in Endocrinology and Metabolism. 22(12):481-490
"On the role of frustration in the energy landscapes of allosteric proteins" (2011) Ferreiro, D.U.; Hegler, J.A.; Komives, E.A.; Wolynes, P.G. Proceedings of the National Academy of Sciences of the United States of America. 108(9):3499-3503
"Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes" (2011) Craig, P.O.;Lätzer, J.;Weinkam, P. (...)Wolynes, P.G. Journal of the American Chemical Society. 133(43):17463-17472
"Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes" (2011) Craig, P.O.;Lätzer, J.;Weinkam, P. (...)Wolynes, P.G. Journal of the American Chemical Society. 133(43):17463-17472
"Glucosidase II and N-glycan mannose content regulate the half-lives of monoglucosylated species in vivo" (2011) Stigliano, I.D.;Alculumbre, S.G.;Labriola, C.A. (...)D'Alessio, C. Molecular Biology of the Cell. 22(11):1810-1823
"Glucosidase II and N-glycan mannose content regulate the half-lives of monoglucosylated species in vivo" (2011) Stigliano, I.D.;Alculumbre, S.G.;Labriola, C.A. (...)D'Alessio, C. Molecular Biology of the Cell. 22(11):1810-1823
"DNA-binding specificity prediction with FoldX" (2011) Nadra, A.D.; Serrano, L.; Alibés, A. Methods in Enzymology. 498:3-18
"Thermodynamics of cooperative DNA recognition at a replication origin and transcription regulatory site" (2010) Dellarole, M.; Sánchez, I.E.; De Prat Gay, G. Biochemistry. 49(48):10277-10286
"Role of pre-A motif in nitric oxide scavenging by truncated hemoglobin, HbN, of Mycobacterium tuberculosis" (2009) Lama, A.;Pawaria, S.;Bidon-Chanal, A. (...)Dikshit, K.L. Journal of Biological Chemistry. 284(21):14457-14468
"Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing" (2009) Schor, I.E.;Rascovan, N.;Pelisch, F. (...)Kornblihtt, A.R. Proceedings of the National Academy of Sciences of the United States of America. 106(11):4325-4330
"Glucosidase II β subunit modulates N-glycan trimming in fission yeasts and mammals" (2009) Stigliano, I.D.;Caramelo, J.J.;Labriola, C.A. (...)D'Alessio, C. Molecular Biology of the Cell. 20(17):3974-3984
"Glucosidase II β subunit modulates N-glycan trimming in fission yeasts and mammals" (2009) Stigliano, I.D.;Caramelo, J.J.;Labriola, C.A. (...)D'Alessio, C. Molecular Biology of the Cell. 20(17):3974-3984
"Multiparametric Fluorescence Detection of Early Stages in the Amyloid Protein Aggregation of Pyrene-labeled α-Synuclein" (2008) Thirunavukkuarasu, S.; Jares-Erijman, E.A.; Jovin, T.M. Journal of Molecular Biology. 378(5):1064-1073
"Effects of phosphatidylethanolamine glycation on lipid-protein interactions and membrane protein thermal stability" (2008) Levi, V.;Villamil Giraldo, A.M.;Castello, P.R. (...)González Flecha, F.L. Biochemical Journal. 416(1):145-152
"The catalytic domain of insulin-degrading enzyme forms a denaturant-resistant complex with amyloid β peptide: Implications for Alzheimer disease pathogenesis" (2008) Llovera, R.E.;De Tullio, M.;Alonso, L.G. (...)Castaño, E.M. Journal of Biological Chemistry. 283(25):17039-17048
"Nitric Oxide Reactivity with Globins as Investigated Through Computer Simulation" (2008) Marti, M.A.;Capece, L.;Bidon-Chanal, A. (...)Estrin, D.A. Methods in Enzymology. 437:477-498
"Nitric Oxide Reactivity with Globins as Investigated Through Computer Simulation" (2008) Marti, M.A.;Capece, L.;Bidon-Chanal, A. (...)Estrin, D.A. Methods in Enzymology. 437:477-498
"A spectroscopic study of the temperature induced modifications on ferredoxin folding and iron-sulfur moieties" (2007) Todorovic, S.;Leal, S.S.;Salgueiro, C.A. (...)Gomes, C.M. Biochemistry. 46(37):10733-10738
"A spectroscopic study of the temperature induced modifications on ferredoxin folding and iron-sulfur moieties" (2007) Todorovic, S.;Leal, S.S.;Salgueiro, C.A. (...)Gomes, C.M. Biochemistry. 46(37):10733-10738
"A yeast sterol carrier protein with fatty-acid and fatty-acyl-CoA binding activity" (2006) Ferreyra, R.G.;Burgardt, N.I.;Milikowski, D. (...)Ermácora, M.R. Archives of Biochemistry and Biophysics. 453(2):197-206
"The folding mechanism of a dimeric β-barrel domain" (2005) De Prat-Gay, G.;Nadra, A.D.;Corrales-Izquierdo, F.J. (...)Mok, Y.-K. Journal of Molecular Biology. 351(3):672-682
"The folding mechanism of a dimeric β-barrel domain" (2005) De Prat-Gay, G.;Nadra, A.D.;Corrales-Izquierdo, F.J. (...)Mok, Y.-K. Journal of Molecular Biology. 351(3):672-682
"Ligand-induced thermostability in proteins: Thermodynamic analysis of ANS-albumin interaction" (2005) Celej, M.S.;Dassie, S.A.;Freire, E. (...)Fidelio, G.D. Biochimica et Biophysica Acta - Proteins and Proteomics. 1750(2):122-133
"Engineering of a polymeric bacterial protein as a scaffold for the multiple display of peptides" (2004) Laplagne, D.A.;Zylberman, V.;Ainciart, N. (...)Goldbaum, F.A. Proteins: Structure, Function and Genetics. 57(4):820-828
"Engineering of a polymeric bacterial protein as a scaffold for the multiple display of peptides" (2004) Laplagne, D.A.;Zylberman, V.;Ainciart, N. (...)Goldbaum, F.A. Proteins: Structure, Function and Genetics. 57(4):820-828
"NMR of α-synuclein-polyamine complexes elucidates the mechanism and kinetics of induced aggregation" (2004) Fernández, C.O.;Hoyer, W.;Zweckstetter, M. (...)Jovin, T.M. EMBO Journal. 23(10):2039-2046
"The HPV16 E7 Viral Oncoprotein Self-Assembles into Defined Spherical Oligomers" (2004) Alonso, L.G.;García-Alai, M.M.;Smal, C. (...)De Prat-Gay, G. Biochemistry. 43(12):3310-3317
"Transcriptional activators differ in their abilities to control alternative splicing" (2002) Nogués, G.;Kadener, S.;Cramer, P. (...)Kornblihtt, A.R. Journal of Biological Chemistry. 277(45):43110-43114
"Rapeseed chloroplast thioredoxin-m modulation of the affinity for target proteins" (2001) Duek, P.D.; Wolosiuk, R.A. Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology. 1546(2):299-311
"Three-dimensional solution structure and stability of thioredoxin m from spinach" (2001) Neira, J.L.;González, C.;Toiron, C. (...)Rico, M. Biochemistry. 40(50):15246-15256
"Overexpression and refolding of the hydrophobic ribosomal P0 protein from Trypanosoma cruzi: A component of the P1/P2/P0 complex" (2001) Juri Ayub, M.; Levin, M.J.; Aguilar, C.F. Protein Expression and Purification. 22(2):225-233
"Human p8 Is a HMG-I/Y-like Protein with DNA Binding Activity Enhanced by Phosphorylation" (2001) Encinar, J.A.;Mallo, G.V.;Mizyrycki, C. (...)Iovanna, J.L. Journal of Biological Chemistry. 276(4):2742-2751
"Folding of a pressure-denatured model protein" (1999) Mohana-Borges, R.; Silva, J.L.; Ruiz-Sanz, J.; De Prat-Gay, G. Proceedings of the National Academy of Sciences of the United States of America. 96(14):7888-7893
"Folding of a pressure-denatured model protein" (1999) Mohana-Borges, R.; Silva, J.L.; Ruiz-Sanz, J.; De Prat-Gay, G. Proceedings of the National Academy of Sciences of the United States of America. 96(14):7888-7893