Artículo

Stenglein, S.A.; Rodriguero, M.S.; Chandler, E.; Jennings, P.; Salerno, G.L.; Nicholson, P. "Phylogenetic relationships of Fusarium poae based on EF-1α and mtSSU sequences" (2010) Fungal Biology. 114(1):96-106
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Abstract:

A molecular phylogenetic analysis of Fusarium poae isolates from South America (Argentina) and Europe (mainly England, Germany, Italy) was performed using 98 F. poae, four Fusarium culmorum, two Fusarium sporotrichioides and one Fusarium langsethiae isolates. Phylogenetic analyses were performed using nuclear (translation elongation factor 1-alpha, EF-1α) and mitochondrial (mitochondrial small subunit rDNA, mtSSU) sequences. Partitioned (each dataset separately) and combined (EF-1α+. mtSSU) analyses did not reveal any clear correlations from the inferred branching topology, between the distribution of observed haplotypes and the geographic origin and/or host species. Results from the present study confirmed that isolates from F. poae form a monophyletic group, and the low variability within isolates from a broad geographic range suggests a common lineage history. Among F. poae isolates from Argentina, however, some were found to possess an insert within mtSSU with structural similarities to group IC2 introns. F. poae isolates differing by the presence/absence of a mtSSU insertion were characterized further by analysis of a portion of the Tri5 gene, but this sequence was unable to reveal variability. The presence of this insert only within isolates from Argentina suggests that evolutionary events (insertions/deletions) are probably taking place within the Argentinian F. poae isolates, and that the acquisition of this insert occurred after geographic isolation of the Argentinian and European populations. © 2009 The British Mycological Society.

Registro:

Documento: Artículo
Título:Phylogenetic relationships of Fusarium poae based on EF-1α and mtSSU sequences
Autor:Stenglein, S.A.; Rodriguero, M.S.; Chandler, E.; Jennings, P.; Salerno, G.L.; Nicholson, P.
Filiación:Laboratorio de Biología Funcional y Biotecnología (BIOLAB)-CEBB, Facultad de Agronomía de Azul, UNCPBA, Av. República de Italia #780, CP 7300 Azul, Buenos Aires, Argentina
CONICET, Argentina
Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, C1428EHA Buenos Aires, Argentina
John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, United Kingdom
Central Science Laboratory, Sand Hutton, York YO41 1LZ, United Kingdom
Fundación para Investigaciones Biológicas Aplicadas (FIBA)-CEBB, Vieytes 3103, CP 7600 Mar del Plata, Argentina
Palabras clave:EF1-α; Fusarium poae; MtSSU rDNA; Tri5; elongation factor 1; fungal DNA; lyase; mitochondrial DNA; ribosome DNA; trichodiene synthetase; fungus; genetic analysis; isolated population; molecular analysis; phylogenetics; range size; taxonomy; Argentina; article; barley; classification; DNA sequence; Europe; Fusarium; genetics; intron; isolation and purification; microbiology; phylogeny; polymerase chain reaction; species difference; wheat; Argentina; Carbon-Carbon Lyases; DNA, Fungal; DNA, Mitochondrial; DNA, Ribosomal; Europe; Fusarium; Hordeum; Introns; Peptide Elongation Factor 1; Phylogeny; Polymerase Chain Reaction; Sequence Analysis, DNA; Species Specificity; Triticum; Europe; South America; Fusarium; Fusarium culmorum; Fusarium langsethiae; Fusarium poae; Fusarium sporotrichioides
Año:2010
Volumen:114
Número:1
Página de inicio:96
Página de fin:106
DOI: http://dx.doi.org/10.1016/j.mycres.2009.10.010
Título revista:Fungal Biology
Título revista abreviado:Fungal Biol.
ISSN:18786146
CAS:lyase, 9055-04-3; Carbon-Carbon Lyases, 4.1.-; DNA, Fungal; DNA, Mitochondrial; DNA, Ribosomal; Peptide Elongation Factor 1; trichodiene synthetase, 4.2.3.6
Registro:https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_18786146_v114_n1_p96_Stenglein

Referencias:

  • Akaike, H., Information theory and an extension of the maximum likelihood principle (1973) Second International Symposium on Information Theory, pp. 267-281. , Akad Kiado, Budapest, Hungary, P.N. Petrov, F. Csaki (Eds.)
  • Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., Basic local alignment search tool (1990) Journal of Molecular Biology, 215, pp. 403-410
  • Bennett, J.W., Klich, M., Mycotoxins (2003) Clinical Microbiology Reviews, 16, pp. 497-516
  • Bourdages, J.V., Marchand, S., Rioux, S., Belzile, F.J., Diversity and prevalence of Fusarium species from Quebec barley fields (2006) Canadian Journal of Plant Pathology, 28, pp. 419-425
  • Brown, W.N., Geroge, M., Wilson, A.C., Rapid evolution of animal mitochondrial DNA (1979) Proceedings of the National Academy of Sciences of the United States of America, 76, pp. 1967-1971
  • Bruns, T.D., Szaro, T.M., Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms (1992) Molecular Biology and Evolution, 9, pp. 836-855
  • Buttner, P., Species of Fusarium occurring in the years 2003 and 2004 on wheat and rye in Bavaria (2006) Gesunde Pflanzen, 58, pp. 28-33
  • Carbone, I., Anderson, J.B., Kohn, L.M., A group-I intron in the mitochondrial small subunit ribosomal RNA gene of Sclerotinia sclerotiorum (1995) Current Genetics, 27, pp. 166-176
  • Chen, W., Gray, L.E., Grau, C.R., Characterization of a group I intron in the nuclear rDNA differentiating Phialophora gregata f. sp. adzukicola from P. gregata f. sp. sojae (1998) Mycoscience, 39, pp. 279-283
  • D'Mello, J.P.F., Placinta, C.M., McDonald, A.M.C., Fusarium mycotoxins: a review of global implications for animal health, welfare and productivity (1999) Animal Feed Science and Technology, 80, pp. 183-205
  • Desjardins, A.E., (2006) Fusarium Mycotoxins. Chemistry, Genetics, and Biology, , APS Press, MN
  • Dusabenyagasani, M., Laflamme, G., Hameli, R.C., Nucleotide polymorphisms in three genes support host and geographic speciation in tree pathogens belonging to Gremmeniella spp (2002) Canadian Journal of Botany, 80, pp. 1151-1159
  • Farris, J.S., Kallersjo, M., Kluge, A.G., Bult, C., Testing significance of incongruence (1995) Cladistics, 10, pp. 315-319
  • Felsenstein, J., Evolutionary trees from DNA sequences: a maximum likelihood approach (1981) Journal of Molecular Evolution, 17, pp. 368-376
  • Felsenstein, J., Confidence limits on phylogenies: an approach using the bootstrap (1985) Evolution, 39, pp. 783-791
  • Geiser, D.M., Jimenez-Gasco, M.D., Kang, S.C., Makalowska, I., veeraraghavan, N., Ward, T.J., Zhang, N., O'Donell, K., FUSARIUM-ID v. 1.0: a DNA sequence database for identifying Fusarium (2004) European Journal of Plant Pathology, 110, pp. 473-479
  • Goloboff, P.A., Farris, J.S., Nixon, K.C., (2003) TNT 1.0 (Beta). Tree Analysis Using New Technologies, , http://www.zmuc.dk/public/phylogeny/TNT
  • Gonzalez, P., Barroso, G., Labarere, J., DNA sequence and secondary structure of the mitochondrial small subunit ribosomal RNA coding region including a group-IC2 intron from the cultivated basidiomycete Agrocybe aegerita (1997) Gene, 184, pp. 55-63
  • Griffiths-Jones, S., Moxon, S., Marshall, M., Khanna, A., Eddy, S.R., Bateman, A., Rfam: an RNA family database (2003) Nucleic Acids Research, 31, pp. 439-441
  • Hohn, T.M., Beremand, M.N., Isolation and nucleotide sequence of a sesquiterpene cyclase gene from the trichothecene-producing fungus Fusarium sporotrichioides (1989) Gene, 79, pp. 131-138
  • Huelsenbeck, J.O., Ronquist, F., MrBayes: Bayesian inference of phylogeny (2001) Bioinformatics, 17, pp. 754-755
  • Kerènyi, Z., Moretti, A., Waalwijk, C., Oláh, B., Hornok, L., Mating type sequences in asexually reproducing Fusarium species (2004) Applied and Environmental Microbiology, 70, pp. 4419-4423
  • Knutsen, A.K., Torp, M., Holst-Jensen, A., Phylogenetic analyses of the Fusarium poae, Fusarium sporotrichioides and Fusarium langsethiae species complex based on partial sequences of the translation elongation factor-1 alpha gene (2004) International Journal of Food Microbiology, 95, pp. 287-295
  • Kristensen, R., Torp, M., Kosiak, B., Holst-Jensen, A., Phylogeny and toxigenic potential is correlated in Fusarium species as revealed by partial translation elongation factor 1 alpha gene sequences (2005) Mycological Research, 109, pp. 173-186
  • Kumar, S., Tamura, K., Nei, M., MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment (2004) Briefings in Bioinformatics, 5, pp. 150-163
  • Lang, B.F., Laforest, M.J., Burger, G., Mitochondrial introns: a critical review (2007) Trends in Genetics, 23, pp. 119-125
  • Li, K.N., Rouse, D.I., German, T.L., PCR primers that allow intergeneric differentiation of ascomycetes and their application to Verticillium spp (1994) Applied and Environmental Microbiology, 60, pp. 4324-4331
  • Li, S., Tam, Y.K., Hartman, G.L., Molecular differentiation of Fusarium solani f. sp. glycines from other F. solani based on mitochondrial small subunit rDNA sequences (2000) Phytopathology, 90, pp. 491-497
  • Mbofung, G.Y., Hong, S.G., Pryor, B.M., Phylogeny of Fusarium oxysporum f. sp. lactucae inferred from mitochondrial small subunit, elongation factor 1-α, and nuclear ribosomal intergenic spacer sequence data (2007) Phytopathology, 97, pp. 87-98
  • Miedaner, T., Schilling, A.G., Geiger, H.H., Molecular genetic diversity and variation for aggressiveness in populations of Fusarium graminearum and Fusarium culmorum sampled from wheat fields in different countries (2001) Journal of Phytopathology, 149, pp. 641-648
  • Nicholson, P., Rezanoor, H.N., Simpson, D.R., Joyce, D., Differentiation and quantification of the cereal eyespot fungi Tapesia yallundae and Tapesia acuformis using a PCR assay (1997) Plant Pathology, 46, pp. 842-856
  • Nicholson, P., Simpson, D.R., Wilson, A.H., Chandler, E., Thomsett, M., Detection and differentiation of trichothecene and enniantin-producing Fusarium species on small-grain cereals (2004) European Journal of Plant Pathology, 110, pp. 503-514
  • Niessen, L., Schmidt, H., Vogel, R.F., The use of tri5 gene sequence for PCR detection and taxonomy of trichothecene-producing species in the Fusarium section Sporotrichiella (2004) International Journal of Food Microbiology, 95, pp. 305-319
  • Nixon, K.C., (2002) WinClada Ver. 1.00.08, , http://www.cladistics.com/about_winc.htm, Published by the author, Ithaca, NY
  • Nixon, K.C., Carpenter, J.M., On outgroups (1993) Cladistics, 9, pp. 413-426
  • Nixon, K.C., Carpenter, J.M., On simultaneous analysis (1996) Cladistics, 12, pp. 221-242
  • Nuin, P.A.S., (2005) Mtgui: a simple interface to ModelTest. Program distributed by the author, , http://www.genedrift.org/mtgui.php, University of Toronto
  • Nylander, J.A.A., (2004) MrModeltest v.2. Evolutionary Biology Centre, , Uppsala University, Sweden
  • O'Donnell, K., Kistler, H.C., Cigelnik, E., Ploetz, R.C., Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies (1998) Proceedings of the National Academy of Sciences of the United States of America, 95, pp. 2044-2049
  • O'Donnell, K., Kistler, H.C., Tacke, B.K., Casper, H.H., Gene genealogies reveal global phylogeographic structures and reproductive isolation among lineages of Fusarium graminearum the fungus causing wheat scab (2000) Proceedings of the National Academy of Sciences of the United States of America, 97, pp. 7905-7910
  • O'Donnell, K., Ward, T.J., Geiser, D.M., Kistler, H.C., Aoki, T., Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade (2004) Fungal Genetics and Biology, 41, pp. 600-623
  • Parry, D.W., Jenkinson, P., McLeod, L., Fusarium ear blight (scab) in small grains - a review (1995) Plant Pathology, 44, pp. 207-238
  • Parry, D.W., Nicholson, P., Development of a PCR assay to detect Fusarium poae in wheat (1996) Plant Pathology, 45, pp. 383-391
  • Posada, D., Buckley, T.R., Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests (2004) Systematic Biology, 53, pp. 793-808
  • Rotter, B.A., Prelusky, D.B., Pestka, J.J., Toxicology of deoxynivalenol (vomitoxin) (1996) Journal of Toxicology and Environmental Health, 48, pp. 1-34
  • Ronquist, F., Huelsenbeck, J.P., MrBayes 3: Bayesian phylogenetic inference under mixed models (2003) Bioinformatics, 19, pp. 1572-1574
  • Rozas, J., Sánchez del Barrio, J.C., Messegué, X., Rozas, R., DnaSP: DNA polymorphism analysis by the coalescent and other methods (2003) Briefings in Bioinformatics, 19, pp. 2496-2497
  • Salas, B., Steffenson, B.J., Casper, H.H., Tacke, B., Prom, L.K., Fetch, T.G., Schwarz, P.B., Fusarium species pathogenic to barley and their associated mycotoxins (1999) Plant Disease, 83, pp. 667-674
  • Stenglein, S.A., Fusarium poae: a pathogen that needs more attention (2009) Journal of Plant Pathology, 91, pp. 25-36
  • Stenglein, S.A., Balatti, P.A., Genetic diversity of Phaeoisariopsis griseola in Argentina as revealed by virulence and molecular markers (2006) Physiological and Molecular Plant Pathology, 68, pp. 158-167
  • Stenglein, S.A., Barreto, D., Nicholson, P., Chandler, E., Brambilla, V., Piris, E.M., Saliva, V., Salerno, G., First report of Fusarium poae on tomato in Argentina (2008) Plant Pathology, 58, pp. 401-401
  • Tavaré, S., Some probabilistic and statistical problems in the analysis of DNA sequences (1986) Lectures on Mathematics in the Life Sciences, 17, pp. 57-86
  • Thompson, J.D., Higgins, D.G., Gibson, T.J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice (1994) Nucleic Acids Research, 22, pp. 4673-4680
  • Thrane, U., Adler, A., Clasen, P., Galvano, F., Langseth, W., Lew, H., Logrieco, A., Ritieni, A., Diversity in metabolite production by Fusarium langsethiae, Fusarium poae, and Fusarium sporotrichioides (2004) International Journal of Food Microbiology, 95, pp. 257-266
  • Toth, B., Mesterhazy, A., Nicholson, P., Teren, J., Varga, J., Mycotoxin production and molecular variability of European and American isolates of Fusarium culmorum (2004) European Journal of Plant Pathology, 110, pp. 587-599
  • Wheeler, W., Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data (1995) Systematic Biology, 44, pp. 321-331
  • White, T.J., Bruns, T., Lee, S., Taylor, J., Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics (1990) PCR Protocols. A Guide to Methods and Applications, pp. 315-322. , Academic Press, San Diego, M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.)
  • Wilgenbusch, J.C., Warren, D.L., Swofford, D.L., (2004) AWTY: a system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference, , http://ceb.csit.fsu.edu/awty
  • Wong, L.S.L., Tekauz, A., Leisle, D., Abramson, D., McKenzie, R.I.H., Prevalence, distribution, and importance of Fusarium head blight in wheat in Manitoba (1992) Canadian Journal of Plant Pathology, 14, pp. 233-238
  • Xu, X.M., Parry, D.W., Nicholson, P., Thomsett, M.A., Simpson, D., Edwards, S.G., Cooke, B.M., Tatnell, J., Predominance and association of pathogenic fungi causing Fusarium ear blight in wheat in four European countries (2005) European Journal of Plant Pathology, 112, pp. 143-154
  • Xu, X., Monger, W., Ritieni, A., Nicholson, P., Effect of temperature and duration of wetness during initial infection periods on disease development, fungal biomass and mycotoxin concentrations on wheat inoculated with single, or combinations of, Fusarium species (2007) Plant Pathology, 56, pp. 943-956
  • Xu, X.M., Nicholson, P., Thomsett, M.A., Simpson, D., Cooke, B.M., Doohan, F.M., Brennan, J., Edwards, S.G., Relationship between the fungal complex causing Fusarium head blight of wheat and environmental conditions (2008) Phytopathology, 98, pp. 69-78
  • Yli-Mattila, T., Paavanen, S., Hannukkala, A., Parikka, P., Tahvonen, R., Karjalainen, R., Isozyme and RAPD-PCR analyses of Fusarium avenaceum strains from Finland (1996) Plant Pathology, 45, pp. 126-134

Citas:

---------- APA ----------
Stenglein, S.A., Rodriguero, M.S., Chandler, E., Jennings, P., Salerno, G.L. & Nicholson, P. (2010) . Phylogenetic relationships of Fusarium poae based on EF-1α and mtSSU sequences. Fungal Biology, 114(1), 96-106.
http://dx.doi.org/10.1016/j.mycres.2009.10.010
---------- CHICAGO ----------
Stenglein, S.A., Rodriguero, M.S., Chandler, E., Jennings, P., Salerno, G.L., Nicholson, P. "Phylogenetic relationships of Fusarium poae based on EF-1α and mtSSU sequences" . Fungal Biology 114, no. 1 (2010) : 96-106.
http://dx.doi.org/10.1016/j.mycres.2009.10.010
---------- MLA ----------
Stenglein, S.A., Rodriguero, M.S., Chandler, E., Jennings, P., Salerno, G.L., Nicholson, P. "Phylogenetic relationships of Fusarium poae based on EF-1α and mtSSU sequences" . Fungal Biology, vol. 114, no. 1, 2010, pp. 96-106.
http://dx.doi.org/10.1016/j.mycres.2009.10.010
---------- VANCOUVER ----------
Stenglein, S.A., Rodriguero, M.S., Chandler, E., Jennings, P., Salerno, G.L., Nicholson, P. Phylogenetic relationships of Fusarium poae based on EF-1α and mtSSU sequences. Fungal Biol. 2010;114(1):96-106.
http://dx.doi.org/10.1016/j.mycres.2009.10.010