Artículo

Julió Plana, L.; Nadra, A.D.; Estrin, D.A.; Luque, F.J.; Capece, L."Thermal Stability of Globins: Implications of Flexibility and Heme Coordination Studied by Molecular Dynamics Simulations" (2019) Journal of Chemical Information and Modeling. 59(1):441-452
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Abstract:

Proteins are sensitive to temperature, and abrupt changes in the normal temperature conditions can have a profound impact on both structure and function, leading to protein unfolding. However, the adaptation of certain organisms to extreme conditions raises questions about the structural features that permit the structure and function of proteins to be preserved under these adverse conditions. To gain insight into the molecular basis of protein thermostability in the globin family, we have examined three representative examples: human neuroglobin, horse heart myoglobin, and Drosophila hemoglobin, which differ in their melting temperatures and coordination states of the heme iron in the absence of external ligands. In order to elucidate the possible mechanisms that govern the thermostability of these proteins, microsecond-scale classical molecular dynamics simulations were performed at different temperatures. Structural fluctuations and essential dynamics were analyzed, indicating that the flexibility of the CD region, which includes the two short C and D helixes and the connecting CD loop, is directly related to the thermostability. We observed that a larger inherent flexibility of the protein produces higher thermostability, probably concentrating the thermal fluctuations observed at high temperature in flexible regions, preventing unfolding. Globally, the results of this work improve our understanding of thermostability in the globin family. © 2018 American Chemical Society.

Registro:

Documento: Artículo
Título:Thermal Stability of Globins: Implications of Flexibility and Heme Coordination Studied by Molecular Dynamics Simulations
Autor:Julió Plana, L.; Nadra, A.D.; Estrin, D.A.; Luque, F.J.; Capece, L.
Filiación:Departamento de Química Inorgánica, Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Instituto de Química Física de Los Materiales, Medio Ambiente y Energía, Buenos Aires, C1428EGA, Argentina
Departamento de Fisiología y Biología Molecular y Celular, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires/IQUIBICEN-CONICET, Buenos Aires, C1428EGA, Argentina
Department of Nutrition, Food Sciences and Gastronomy, Faculty of Pharmacy and Food Sciences, University of Barcelona, Campus Torribera, Santa Coloma de Gramenet, 08921, Spain
Institute of Biomedicine (IBUB), Institute of Theoretical and Computational Chemistry (IQTCUB), University of Barcelona, Barcelona, 08028, Spain
Palabras clave:Hemoglobin; Molecular dynamics; Porphyrins; Stability; Thermodynamic stability; Classical molecular dynamics; Horse heart myoglobin; Inherent flexibility; Molecular dynamics simulations; Protein thermostabilities; Structural fluctuations; Temperature conditions; Thermal fluctuations; Proteins
Año:2019
Volumen:59
Número:1
Página de inicio:441
Página de fin:452
DOI: http://dx.doi.org/10.1021/acs.jcim.8b00840
Handle:http://hdl.handle.net/20.500.12110/paper_15499596_v59_n1_p441_JulioPlana
Título revista:Journal of Chemical Information and Modeling
Título revista abreviado:J. Chem. Inf. Model.
ISSN:15499596
CODEN:JCISD
Registro:https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_15499596_v59_n1_p441_JulioPlana

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Citas:

---------- APA ----------
Julió Plana, L., Nadra, A.D., Estrin, D.A., Luque, F.J. & Capece, L. (2019) . Thermal Stability of Globins: Implications of Flexibility and Heme Coordination Studied by Molecular Dynamics Simulations. Journal of Chemical Information and Modeling, 59(1), 441-452.
http://dx.doi.org/10.1021/acs.jcim.8b00840
---------- CHICAGO ----------
Julió Plana, L., Nadra, A.D., Estrin, D.A., Luque, F.J., Capece, L. "Thermal Stability of Globins: Implications of Flexibility and Heme Coordination Studied by Molecular Dynamics Simulations" . Journal of Chemical Information and Modeling 59, no. 1 (2019) : 441-452.
http://dx.doi.org/10.1021/acs.jcim.8b00840
---------- MLA ----------
Julió Plana, L., Nadra, A.D., Estrin, D.A., Luque, F.J., Capece, L. "Thermal Stability of Globins: Implications of Flexibility and Heme Coordination Studied by Molecular Dynamics Simulations" . Journal of Chemical Information and Modeling, vol. 59, no. 1, 2019, pp. 441-452.
http://dx.doi.org/10.1021/acs.jcim.8b00840
---------- VANCOUVER ----------
Julió Plana, L., Nadra, A.D., Estrin, D.A., Luque, F.J., Capece, L. Thermal Stability of Globins: Implications of Flexibility and Heme Coordination Studied by Molecular Dynamics Simulations. J. Chem. Inf. Model. 2019;59(1):441-452.
http://dx.doi.org/10.1021/acs.jcim.8b00840