Abstract:
A combination of mass spectrometry, Raman microspectroscopy, circular dichroism and X-ray crystallography has been used to obtain detailed information on the reaction of an iridium-based CO-releasing molecule (Ir-CORM), Cs2IrCl5CO, with a model protein, bovine pancreatic ribonuclease. The results show that Ir-compound fragments bind to the N-terminal amine and close to histidine and methionine side chains, and the CO ligand is retained for a long time. The data provide helpful information for identifying protein targets for Ir-CORMs and for studying the mechanism that allows them to exhibit their interesting biological properties. © The Royal Society of Chemistry 2016.
Registro:
Documento: |
Artículo
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Título: | Mapping the protein-binding sites for iridium(III)-based CO-releasing molecules |
Autor: | Caterino, M.; Petruk, A.A.; Vergara, A.; Ferraro, G.; Marasco, D.; Doctorovich, F.; Estrin, D.A.; Merlino, A. |
Filiación: | Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte sant'Angelo, Via Cintia, Napoli, I-80126, Italy Departamento de Química Inorgánica, Analítica y Química Física, INQUIMAE-CONICET, University of Buenos Aires, Ciudad Universitaria, Pab. 2C1428EHA, Argentina CNR Institute of Biostructures and Bioimages, Via Mezzocannone 16, Napoli, Italy Department of Pharmacy, University of Naples Federico II, Italy
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Palabras clave: | Amino acids; Binding sites; Bins; Biochemistry; Crystallography; Dichroism; Iridium; Mass spectrometry; Molecules; Proteins; Biological properties; Bovine pancreatic ribonuclease; Model proteins; N-terminals; Protein targets; Protein-binding sites; Raman microspectroscopy; Side-chains; X ray crystallography; carbon monoxide; iridium; protein; protein binding; binding site; chemical structure; chemistry; circular dichroism; mass spectrometry; Raman spectrometry; X ray crystallography; Binding Sites; Carbon Monoxide; Circular Dichroism; Crystallography, X-Ray; Iridium; Mass Spectrometry; Molecular Structure; Protein Binding; Proteins; Spectrum Analysis, Raman |
Año: | 2016
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Volumen: | 45
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Número: | 30
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Página de inicio: | 12206
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Página de fin: | 12214
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DOI: |
http://dx.doi.org/10.1039/c6dt01685e |
Título revista: | Dalton Transactions
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Título revista abreviado: | Dalton Trans.
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ISSN: | 14779226
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CODEN: | DTARA
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CAS: | carbon monoxide, 630-08-0; iridium, 13967-67-4, 7439-88-5; protein, 67254-75-5; Carbon Monoxide; Iridium; Proteins
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Registro: | https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_14779226_v45_n30_p12206_Caterino |
Referencias:
- Ang, W.H., Casini, A., Sava, G., Dyson, P.J., (2011) J. Organomet. Chem., 696, pp. 989-998
- Casini, A., Guerri, A., Gabbiani, C., Messori, L., (2008) J. Inorg. Biochem., 102, pp. 995-1006
- Casini, A., Gabbiani, C., Mastrobuoni, G., Messori, L., Moneti, G., Pieraccini, G., (2006) ChemMedChem, 1, pp. 413-417
- Meggers, E., (2009) Chem. Commun., pp. 1001-1010
- Casini, A., Reedijk, J., (2012) Chem. Sci., 3 (11), pp. 3135-3144
- Timerbaev, A.R., Hartinger, C.G., Aleksenko, S.S., Keppler, B.K., (2006) Chem. Rev., 106, pp. 2224-2248
- Mejer, S.M., Babak, M.V., Keppler, B.K., Hartinger, C.H., (2014) ChemMedChem, 9, pp. 1351-1355
- Timerbaev, A.R., Pawlak, K., Gabbiani, C., Messori, L., (2011) Trends Anal. Chem., 30 (7), pp. 1120-1138
- Messori, L., Merlino, A., (2016) Coord. Chem. Rev., 315, p. 67
- Hartinger, G.C., Dyson, P.J., (2009) Chem. Soc. Rev., 38, p. 391
- Romao, C.C., Blatter, W.A., Seixas, J.D., Bernardes, G.J., (2012) Chem. Soc. Rev., 41, p. 3571
- Motterlini, R., Sawle, P., Hammad, J., Bains, S., Alberto, R., Foresti, R., Green, C.J., (2005) FASEB J., 19, p. 284
- Johnson, T.R., Mann, B.E., Clark, J.E., Foresti, R., Green, C.J., Motterlini, R., (2003) Angew. Chem., Int. Ed., 42, p. 3722
- Motterlini, R., Clark, J.E., Foresti, R., Sarathchandra, P., Mann, B.E., Green, C.J., (2002) Circ. Res., 90, p. E17
- Pizarro, M.D., Rodriguez, J.V., Mamprin, M.E., Fuller, B.J., Mann, B.E., Motterlini, R., Guibert, E.E., (2009) Cryobiology, 58, p. 248
- Desmard, M., Davidge, K.S., Bouvet, O., Morin, D., Roux, D., Foresti, R., Ricard, J.D., Boczkowski, J., (2009) FASEB J., 23, p. 1023
- Atkin, J., Williams, S., Sawle, P., Motterlini, R., Lynam, J.M., Fairlamb, I.J., (2009) Dalton Trans., 19, p. 3653
- Simpson, P.V., Radacki, K., Braunschweig, H., Schatzschneider, U., (2015) J. Organ. Chem., 782, p. 116
- Bikiel, D.E., Gonzalez Solveyra, E., Di Salvo, F., Milagre, H.M., Eberlin, M.N., Correa, R.S., Ellena, J., Doctorovic, F., (2011) Inorg. Chem., 50, p. 2334
- Bani-Hani, M.G., Greenstein, D., Mann, B.E., Green, C.J., Motterlini, R., (2006) Pharmacol. Rep., 58, p. 132
- Motterlini, R., Haas, B., Foresti, R., (2012) Med. Gas Res., 2, p. 28
- Schallner, N., Schwemmers, S., Schwer, C.I., Froehlich, C., Stoll, P., Humar, M., Pahl, H.L., Goebel, U., (2011) Eur. J. Pharmacol., 670, p. 58
- Wilson, J.L., Jesse, H.E., Hughes, B.M., Lund, V., Naylor, K., Davidge, K.S., Cook, G.M., Poole, R.K., (2013) Antioxid. Redox Signaling, 19, p. 497
- Schwer, C.I., Mutschler, M., Stoll, P., Goebel, U., Humar, M., Hoetzel, A., Schmidt, R., (2010) Mol. Pharmacol., 77, p. 660
- Herrick, R.S., Ziegler, C.J., Leeper, T.C., (2014) J. Organomet. Chem., 751, p. 90
- Santos-Silva, T., Mukhopadhyay, A., Seixas, J.D., Bernardes, G.J., Romao, C.C., Romao, M.J., (2011) J. Am. Chem. Soc., 133, p. 1192
- Santos-Silva, T., Mukhopadhyay, A., Seixas, J.D., Bernardes, G.J., Romao, C.C., Romao, M.J., (2011) Curr. Med. Chem., 18, p. 3361
- Santos, M.F.A., Seixas, J.D., Coelho, A., Mukhopadhyay, A., Reis, P.M., Romao, M.J., Romao, C.C., Santos-Silva, T.J., (2012) Inorg. Biochem., 117, p. 285
- Seixas, J.D., Mukhopadhyay, A., Santos-Silva, T., Otterbein, L.E., Gallo, D.J., Rodrigues, S.S., Guerreiro, B.H., Romao, C.C., (2013) Dalton Trans., 42, p. 5985
- Petruk, A.A., Vergara, A., Marasco, D., Bikiel, D., Doctorovich, F., Estrin, D.A., Merlino, A., (2014) Inorg. Chem., 53, p. 10456
- Russo Krauss, I., Sica, F., Mattia, C.A., Merlino, A., (2012) Int. J. Mol. Sci., 13, p. 3782
- Russo Krauss, I., Messori, L., Cinellu, M.A., Marasco, D., Sirignano, R., Merlino, A., (2014) Dalton Trans., 43, p. 17483
- Messori, L., Cinellu, M.A., Merlino, A., (2014) ACS Med. Chem. Lett., 5, p. 1110
- Messori, L., Scaletti, F., Massai, L., Cinellu, M.A., Gabbiani, C., Vergara, A., Merlino, A., (2013) Chem. Commun., 49, p. 10100
- Minor, W., Cymborowski, M., Otwinowski, Z., Chruszcz, M., (2006) Acta Crystallogr., Sect. D: Biol. Crystallogr., 62, p. 859
- Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L., (2002) Proteins, 46, p. 97
- Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L., (2000) Protein Sci., 9, p. 1217
- Murshudov, G.N., Skubak, P., Lebedev, A.A., Pannu, N.S., Steiner, R.A., Nicholls, R.A., Winn, M.D., Vagin, A.A., (2011) Acta Crystallogr., Sect. D: Biol. Crystallogr., 67, p. 355
- Emsley, P., Lohkamp, B., Scott, W.G., Cowtan, K., (2010) Acta Crystallogr., Sect. D: Biol. Crystallogr., 66, p. 486
- Pettersen, E.F., Goddard, T.D., Huang, C.C., Couch, G.S., Greenblatt, D.M., Meng, E.C., Ferrin, T.E., (2004) J. Comput. Chem., 25, p. 1605
- Vergara, A., Merlino, A., Pizzo, E., D'Alessio, G., Mazzarella, L., (2008) Acta Crystallogr., Sect. D: Biol. Crystallogr., 64, p. 167
- Picone, D., Donnarumma, F., Ferraro, G., Russo Krauss, I., Fagagnini, A., Gotte, G., Merlino, A., (2015) J. Inorg. Biochem., 146, p. 37
- Ang, W.H., Parker, L.J., De Luca, A., Juillerat-Jeanneret, L., Morton, C.J., Lo Bello, M., Parker, M.W., Dyson, P.J., (2009) Angew. Chem., Int. Ed., 48, p. 3854
- Messori, L., Merlino, A., (2014) Inorg. Chem., 53, p. 3929
- Picone, D., Donnarumma, F., Ferraro, G., Russo Krauss, I., Fagagnini, A., Gotte, G., Merlino, A., (2015) J. Inorg. Biochem., 146, p. 37
- Messori, L., Marzo, T., Merlino, A., (2015) J. Inorg. Biochem., 153, p. 136
- Ferraro, G., Messori, L., Merlino, A., (2015) Chem Commun., 51, p. 2559
- Huliciak, M., Reinhard, L., Laursen, M., Fedosova, N., Nissen, P., Kubala, M., (2014) Biochem. Pharmacol., 92, p. 494
- Ferraro, G., Massai, L., Messori, L., Merlino, A., (2015) Chem. Commun., 51, p. 9436
- Tabe, H., Fujita, K., Abe, S., Tsujimoto, M., Kuchimaru, T., Kizaka-Kondoh, S., Takano, M., Ueno, T., (2015) Inorg. Chem., 54, p. 215
- Chaves-Ferreira, M., Albuquerque, I.S., Matak-Vinkovic, D., Coelho, A.C., Carvalho, S.M., Saraiva, L.M., Romao, C.C., Bernardes, G.J.L., (2015) Angew. Chem., Int. Ed., 54, p. 1172
- Crabtree, R., (1979) Acc. Chem. Res., 127 (9), pp. 331-337
- Yu, Z.T., (2015) Organometallics and Related Molecules for Energy Conversion, Part of the Series Green Chemistry and Sustainable Technology, pp. 513-537
- Housecroft, C.E., (2006) Iridium: Inorganic & Coordination Chemistry. Encyclopedia of Inorganic Chemistry, , J Wiley and Sons, 10.1002/0470862106.ia101
- Zhang, S., Hosaka, M., Yoshihara, T., Negishi, K., Iida, Y., Tobita, S., Takeuchi, T., (2010) Cancer Res., 70 (11), pp. 4490-4498
- Davis, K.M., Bitting, A.L., Markwalter, C.F., Bauer, W.S., Wright, D.W., (2015) J. Visualized Exp., 101, p. e52856
Citas:
---------- APA ----------
Caterino, M., Petruk, A.A., Vergara, A., Ferraro, G., Marasco, D., Doctorovich, F., Estrin, D.A.,..., Merlino, A.
(2016)
. Mapping the protein-binding sites for iridium(III)-based CO-releasing molecules. Dalton Transactions, 45(30), 12206-12214.
http://dx.doi.org/10.1039/c6dt01685e---------- CHICAGO ----------
Caterino, M., Petruk, A.A., Vergara, A., Ferraro, G., Marasco, D., Doctorovich, F., et al.
"Mapping the protein-binding sites for iridium(III)-based CO-releasing molecules"
. Dalton Transactions 45, no. 30
(2016) : 12206-12214.
http://dx.doi.org/10.1039/c6dt01685e---------- MLA ----------
Caterino, M., Petruk, A.A., Vergara, A., Ferraro, G., Marasco, D., Doctorovich, F., et al.
"Mapping the protein-binding sites for iridium(III)-based CO-releasing molecules"
. Dalton Transactions, vol. 45, no. 30, 2016, pp. 12206-12214.
http://dx.doi.org/10.1039/c6dt01685e---------- VANCOUVER ----------
Caterino, M., Petruk, A.A., Vergara, A., Ferraro, G., Marasco, D., Doctorovich, F., et al. Mapping the protein-binding sites for iridium(III)-based CO-releasing molecules. Dalton Trans. 2016;45(30):12206-12214.
http://dx.doi.org/10.1039/c6dt01685e