Registro:

Referencias:

• Alm, E.W., Oerther, D.B., Larsen, N., Stahl, D.A., Raskin, L., The oligonucleotide probe database (1996) Appl Environ Microbiol, 62, pp. 3557-3559
• Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., Basic local alignment search tool (1990) J Mol Biol, 215, pp. 403-410
• Antón, A.I., Martínez-Murcia, A.J., Rodríguez-Valera, F., Intraspecific diversity of the 23S rRNA gene and the spacer region downstream in Escherichia coli (1999) J Bacteriol, 181, pp. 2703-2709
• Barberio, C., Pagliai, L., Cavalieri, D., Fani, R., Biodiversity and horizontal gene transfer in culturable bacteria isolated from activated sludge enriched in nonylphenol ethoxylates (2001) Res Microbiol, 152, pp. 105-112
• Barns, S.M., Takala, S.L., Kuske, C.R., Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment (1999) Appl Environ Microbiol, 65, pp. 1731-1737
• Briones, A., Raskin, L., Diversity and dynamics of microbial communities in engineered environments and their implications for process stability (2003) Curr Opin Biotechnol, 14, pp. 270-276
• Von Canstein, H., Kelly, S., Li, Y., Wagner-Dobler, I., Species diversity improves the efficiency of mercury-reducing biofilms under changing environmental conditions (2002) Appl Environ Microbiol, 68, pp. 2829-2837
• Cole, J.R., Chai, B., Farris, R.J., Wang, Q., Kulam, S.A., McGarrell, D.M., The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis (2005) Nucleic Acids Res, 33, pp. 294-D296
• Curtis, T.P., Sloan, W.T., Prokaryotic diversity and its limits: Microbial community structure in nature and implications for microbial ecology (2004) Curr Opin Microbiol, 7, pp. 221-226
• Curtis, T.P., Head, I.M., Graham, D.W., Theoretical ecology for engineering biology (2003) Environ Sci Technol, 37, pp. 64A-70A
• Daims, H., Nielsen, J.L., Nielsen, P.H., Schleifer, K.H., Wagner, M., In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants (2001) Appl Environ Microbiol, 67, pp. 5273-5284
• Ehrmann, M., Ludwig, W., Schleifer, K.H., Reverse dot blot hybridization. a useful method for the direct identification of lactic acid bacteria in fermented food (1994) FEMS Microbiol Lett, 117, pp. 143-150
• Eichner, C.A., Erb, R.W., Timmis, K.N., Wagner-Dobler, I., Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community (1999) Appl Environ Microbiol, 65, pp. 102-109
• Fegatella, F., Lim, J., Kjelleberg, S., Cavicchioli, R., Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256 (1998) Appl Environ Microbiol, 64, pp. 4433-4438
• Felske, A., Rheims, H., Wolterink, A., Stackebrandt, E., Akkermans, A.D.L., Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils (1997) Microbiology, 143, pp. 2983-2989
• Ferguson, P.L., Iden, C.R., Brownawell, B.J., Distribution and fate of neutral alkylphenol ethoxylate metabolites in a sewage-impacted urban estuary (2001) Environ Sci Technol, 35, pp. 2428-2435
• Fernandez, A., Huang, S.Y., Seston, S., Xing, J., Hickey, R., Criddle, C., Tiedje, J., How stable is stable? Function versus community composition (1999) Appl Environ Microbiol, 65, pp. 3697-3704
• Friedrich, U., Prior, K., Altendorf, K., Lipski, A., High bacterial diversity of a waste gas-degrading community in an industrial biofilter as shown by a 16S rDNA clone library (2002) Environ Microbiol, 4, pp. 721-734
• Fujii, K., Urano, N., Ushio, H., Satomi, M., Kimura, S., Sphingomonas cloacae sp nov., a nonylphenol-degrading bacterium isolated from wastewater of a sewage-treatment plant in Tokyo (2001) Int J Syst Evol Microbiol, 51, pp. 603-610
• Garland, J.L., Cook, K.L., Adams, J.L., Kerkhof, L., Culturability as an indicator of succession in microbial communities (2001) Microb Ecol, 42, pp. 150-158
• Godon, J.J., Zumstein, E., Dabert, P., Habouzit, F., Moletta, R., Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis (1997) Appl Environ Microbiol, 63, pp. 2802-2813
• Gomes, N.C.M., Heuer, H., Schonfeld, J., Costa, R., Mendonca-Hagler, L., Smalla, K., Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis (2001) Plant Soil, 232, pp. 167-180
• Gross, B., Montgomery-Brown, J., Naumann, A., Reinhard, M., Occurrence and fate of pharmaceuticals and alkylphenol ethoxylate metabolites in an effluent-dominated river and wetland (2004) Environ Toxicol Chem, 23, pp. 2074-2083
• Harms, G., Layton, A.C., Dionisi, H.M., Gregory, I.R., Garrett, V.M., Hawkins, S.A., Real-time PCR quantification of nitrifying bacteria in a municipal wastewater treatment plant (2003) Environ Sci Technol, 37, pp. 343-351
• Heuer, H., Hartung, K., Wieland, G., Kramer, I., Smalla, K., Polynucleotide probes that target a hypervariable region of 16S rRNA genes to identify bacterial isolates corresponding to bands of community fingerprints (1999) Appl Environ Microbiol, 65, pp. 1045-1049
• John, D.M., White, G.F., Mechanism for biotransformation of nonylphenol polyethoxylates to xenoestrogens in Pseudomonas putida (1998) J Bacteriol, 180, pp. 4332-4338
• Juretschko, S., Loy, A., Lehner, A., Wagner, M., The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach (2002) Syst Appl Microbiol, 25, pp. 84-99
• Kaewpipat, K., Grady, C.P.L., Microbial population dynamics in laboratory-scale activated sludge reactors (2002) Water Sci Technol, 46, pp. 19-27
• Kalmbach, S., Manz, W., Bendinger, B., Szewzyk, U., In situ probing reveals Aquabacterium commune as a widespread and highly abundant bacterial species in drinking water biofilms (2000) Water Res, 34, pp. 575-581
• Lapara, T.M., Nakatsu, C.H., Pantea, L.M., Alleman, J.E., Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE (2002) Water Res, 36, pp. 638-646
• Lozada, M., Itria, R.F., Figuerola, E.L.M., Babay, P.A., Gettar, R.T., De Tullio, L.A., Erijman, L., Bacterial community shifts in nonylphenol polyethoxylates-enriched activated sludge (2004) Water Res, 38, pp. 2077-2086
• Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, ARB: A software environment for sequence data (2004) Nucleic Acids Res, 32, pp. 1363-1371
• McHugh, S., Carton, M., Collins, G., O'Flaherty, V., Reactor performance and microbial community dynamics during anaerobic biological treatment of wastewaters at 16-37°C (2004) FEMS Microbiol Ecol, 48, pp. 369-378
• Manz, W., Amann, R., Ludwig, W., Wagner, M., Schleifer, K.-H., Phylogenetic oligodeoxynucleotide probes for major subclasses of Proteobacteria: Problems and solutions (1992) Syst Appl Microbiol, 15, pp. 593-600
• Massol-Deyá, A., Weller, R., Rios-Hernández, L., Zhou, J.Z., Hickey, R.F., Tiedje, J.M., Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater (1997) Appl Environ Microbiol, 63, pp. 270-276
• Moyer, C.L., Tiedje, J.M., Dobbs, F.C., Karl, D.M., A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes - Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature (1996) Appl Environ Microbiol, 62, pp. 2501-2507
• Muyzer, G., De Waal, E.C., Uitterlinden, A.G., Profiling of complex microbial population by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA (1993) Appl Environ Microbiol, 59, pp. 695-700
• Oda, Y., Slagman, S.J., Meijer, W.G., Forney, L.J., Gottschal, J.C., Influence of growth rate and starvation on fluorescent in situ hybridization of Rhodopseudomonas palustris (2000) FEMS Microbiol Ecol, 32, pp. 205-213
• Pender, S., Toomey, M., Carton, M., Eardly, D., Patching, J., Colleran, E., O'Flaherty, V., Long-term effects of operating temperature and sulphate addition on the methanogenic community structure of anaerobic hybrid reactors (2004) Water Res, 38, pp. 619-630
• Quaiser, A., Ochsenreiter, T., Lanz, C., Schuster, S.C., Treusch, A.H., Eck, J., Schleper, C., Acidobacteria form a coherent but highly diverse group within the bacterial domain: Evidence from environmental genomics (2003) Mol Microbiol, 50, pp. 563-575
• Pace, N.R., Stahl, D.A., Lane, D.J., Olsen, G.J., The use of rRNA sequences to characterize natural microbial populations (1986) Adv Microb Ecol, 9, pp. 1-55
• Rainey, F.A., Wardrainey, N., Kroppenstedt, R.M., Stackebrandt, E., The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage. Proposal of Nocardiopsaceae fam nov (1996) Int J Syst Bacteriol, 46, pp. 1088-1092
• Rowan, A.K., Snape, J.R., Fearnside, D., Barer, M.R., Curtis, T.P., Head, I.M., Composition and diversity of ammonia-oxidising bacterial communities in wastewater treatment reactors of different designtreating identical wastewater (2003) FEMS Microbiol Ecol, 43, pp. 195-206
• Schloss, P.D., Hay, A.G., Wilson, D.B., Walker, L.P., Molecular assessment of inoculum efficacy and process reproducibility in composting using ARISA (2003) Trans ASAE, 46, pp. 919-927
• Siyambalapitiya, N., Blackall, L.L., Discrepancies in the widely applied GAM42a fluorescence in situ hybridisation probe for Gammaproteobacteria (2005) FEMS Microbiol Lett, 242, pp. 367-373
• Takeuchi, M., Kawai, F., Shimada, Y., Yokota, A., Taxonomic study of polyethylene glycol-utilizing bacteria: Emended description of the genus Sphingomonas sanguis of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov (1993) Syst Appl Microbiol, 16, pp. 228-238
• Thompson, J.D., Higgins, D.G., Gibson, T.J., Clustal W - Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice (1994) Nucleic Acid Res, 22, pp. 4673-4680
• Ushiba, Y., Takahara, Y., Ohta, H., Sphingobium amiense sp nov., a novel nonylphenol-degrading bacterium isolated from a river sediment (2003) Int J Syst Evol Microbiol, 53, pp. 2045-2048
• Vergin, K.L., Rappe, M.S., Giovannoni, S.J., Streamlined method to analyze 16S rRNA gene clone libraries (2001) Biotechniques, 30, pp. 938-940
• Wagner, M., Loy, A., Nogueira, R., Purkhold, U., Lee, N., Daims, H., Microbial community composition and function in wastewater treatment plants (2002) Antonie Van Leeuwenhoek, 81, pp. 665-680
• Wallner, G., Amann, R., Beisker, W., Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms (1993) Cytometry, 14, pp. 136-143
• Yeates, C., Saunders, A.M., Crocetti, G.R., Blackall, L.L., Limitations of the widely used GAM42a and BET42a probes targeting bacteria in the Gammaproteobacteria radiation (2003) Microbiology, 149, pp. 1239-1247
• Zhou, J.Z., Xia, B.C., Huang, H.S., Treves, D.S., Hauser, L.J., Mural, R.J., Bacterial phylogenetic diversity and a novel candidate division of two humid region, sandy surface soils (2003) Soil Biol Biochem, 35, pp. 915-924
• Zumstein, E., Moletta, R., Godon, J.J., Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis (2000) Environ Microbiol, 2, pp. 69-78

Citas:

---------- APA ----------

---------- CHICAGO ----------

---------- MLA ----------

---------- VANCOUVER ----------