Registro:

Referencias:

• Agatha, S., Redescription of Tintinnopsis parvula Jörgensen, 1912 (Ciliophora: Spirotrichea: Tintinnina), including a novel lorica matrix (2010) Acta Protozool, 49, pp. 213-234
• Agatha, S., Riedel-Lorjé, J.C., Redescription of Tintinnopsis cylindrica Daday, 1887 (Ciliophora: Spirotricha) and unification of tintinnid terminology (2006) Acta Protozool, 45, pp. 137-151
• Agatha, S., Strüder-Kypke, M.C., Phylogeny of the order Choreotrichida (Ciliophora, Spirotricha, Oligotrichea) as inferred from morphology, ultrastructure, ontogenesis, and SSrRNA gene sequences (2007) Eur J Protistol, 43, pp. 37-63
• Agatha, S., Tsai, S.-F., Redescription of the tintinnid Stenosemella pacifica Kofoid and Campbell, 1929 (Ciliophora, Spirotricha) based on live observation, Protargol impregnation, and scanning electron microscopy (2008) J Eukaryot Microbiol, 55, pp. 75-85
• Alder, V.A., Tintinnoinea (1999) South Atlantic Zooplankton, pp. 321-384. , Backhuys Publishers, Leiden, D. Boltovskoy (Ed.)
• Amaral-Zettler, L.A., McCliment, E.A., Ducklow, H.W., Huse, S.M., A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes (2009) PLoS ONE, 4, pp. e6372
• Bakker, C., Phaff, W.J., Tintinnida from coastal waters of the S. W. Netherlands 1. The genus Tintinnopsis Stein (1976) Hydrobiologia, 50, pp. 101-111
• Behnke, A., Friedl, T., Chepurnov, V.A., Mann, D.G., Reproductive compatibility and rDNA sequence analyses in the Sellaphora pupula species complex (Bacillariophyta) (2004) J Phycol, 40, pp. 193-208
• Beszteri, B., Ács, É., Medlin, L.K., Ribosomal DNA sequence variation among sympatric strains of the Cyclotella meneghiniana complex (Bacillariophyceae) reveals cryptic diversity (2005) Protist, 156, pp. 317-333
• Bucklin, A., Steinke, D., Blanco-Bercial, L., DNA barcoding of marine Metazoa (2011) Annu Rev Mar Sci, 3, pp. 471-508
• Caron, D.A., Countway, P.D., Savai, P., Gast, R.J., Schnetzer, A., Moorthi, S.D., Dennett, M.R., Jones, A.C., Defining DNA-based operational taxonomic units for microbial-eukaryote ecology (2009) Appl Environ Microbiol, 75, pp. 5797-5808
• Chantangsi, C., Lynn, D.H., Brandl, M.T., Cole, J.C., Hetrick, N., Ikonomi, P., Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena (2007) Int J Syst Evol Microbiol, 57, pp. 2412-2425
• Doherty, M., Costas, B., McManus, G., Katz, L., Culture-independent assessment of planktonic ciliates in coastal northwest Atlantic waters (2007) Aquat Microb Ecol, 48, pp. 141-154
• Doherty, M., Tamura, M., Costas, B.A., Ritchie, M.E., McManus, G.B., Katz, L.A., Ciliate diversity and distribution across an environmental and depth gradient in Long Island Sound, USA (2010) Environ Microbiol, 12, pp. 886-898
• Dolan, J.R., Ritchie, M.E., Tunin-Ley, A., Pizay, M.-D., Dynamics of core and occasional species in the marine plankton: tintinnid ciliates in the north-west Mediterranean Sea (2009) J Biogeogr, 36, pp. 887-895
• Evans, K.M., Wortley, A.H., Mann, D.G., An assessment of potential diatom "barcode" genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta) (2007) Protist, 158, pp. 349-364
• Finlay, B., Protist taxonomy: an ecological perspective (2004) Philos Trans R Soc Lond B Biol Sci, 359, pp. 599-610
• Finlay, B., Esteban, G.F., Brown, S., Fenchel, T., Hoef-Emden, K., Multiple cosmopolitan ecotypes within a microbial eukaryote morphospecies (2006) Protist, 157, pp. 377-390
• Foissner, W., Protist diversity and distribution: some basic considerations (2008) Biodivers Conserv, 17, pp. 235-242
• Frézal, L., Leblois, R., Four years of DNA barcoding: current advances and prospects (2008) Infect Genet Evol, 8, pp. 727-736
• Gao, S., Gong, J., Lynn, D., Lin, X., Song, W., An updated phylogeny of oligotrich and choreotrich ciliates (Protozoa, Ciliophora, Spirotrichea) with representative taxa collected from Chinese coastal waters (2009) Syst Biodivers, 7, pp. 235-242
• Gentekaki, E., Lynn, D.H., High genetic diversity but no population structure of the peritrichous ciliate Carchesium polypinum in the Grand River basin (North America) inferred from nuclear and mitochondrial markers (2009) Appl Environ Microbiol, 75, pp. 3187-3195
• Guillou, L., Nézan, E., Cueff, V., Erard-Le Denn, E., Cambon-Bonavita, M.-A., Gentien, P., Barbier, G., Genetic diversity and molecular detection of three toxic dinoflagellate genera (Alexandrium, Dinophysis, and Karenia) from French coasts (2002) Protist, 153, pp. 223-238
• Hamsher, S.E., Evans, K.M., Mann, D.G., Poulícková, A., Saunders, G.W., Barcoding diatoms: exploring alternatives to COI-5P (2011) Protist, 162, pp. 405-422
• Hebert, P.D.N., Cywinska, A., Ball, S.L., deWaard, J.R., Biological identifications through DNA barcodes (2003) Proc Roy Soc Lond B Biol, 270, pp. 313-321
• Heger, T.J., Pawlowski, J., Lara, E., Leander, B.S., Todorov, M., Golemansky, V., Mitchell, E.A.D., Comparing potential COI and SSU rDNA barcodes for assessing the diversity and phylogenetic relationships of cyphoderiid testate amoebae (Rhizaria: Euglyphida) (2011) Protist, 162, pp. 131-141
• Hewitt, E.A., Müller, K.M., Cannone, J., Hogan, D.J., Gutell, R., Prescott, D.M., Phylogenetic relationships among 28 spirotrichous ciliates documented by rDNA (2003) Mol Phylogenet Evol, 29, pp. 258-267
• Katz, L.A., Snoeyenbos-West, O., Doerder, F.P., Patterns of protein evolution in Tetrahymena thermophila: Implications for estimates of effective population size (2006) Mol Biol Evol, 23, pp. 608-614
• Kim, S.Y., Yang, E.J., Gong, J., Choi, J.K., Redescription of Favella ehrenbergii (Claparède and Lachmann, 1858) Jörgensen, 1924 (Ciliophora: Choreotrichia), with Phylogenetic Analyses Based on Small Subunit rRNA Gene Sequences (2010) J Eukaryot Microbiol, 57, pp. 460-467
• Kofoid, C., Campbell, A., A conspectus of the marine and freshwater Ciliata belonging to the suborder Tintinnoinea, with description of new species principally from the Agassiz Expedition to the Eastern Tropical Pacific 1904-1905 (1929) Univ California Pub Zool, 34
• Kofoid, C., Campbell, A., Reports on the scientific results of the expedition to the eastern tropical Pacific in charge of Alexander Agassiz, by the US Fish Commission steamer "Albatross" from October 1904 to March 1905, Lieut-Commander LM Garrett, USN Commanding. XXVII. The Ciliata:The Tintinnoinea (1939) Bull Museum Comparative Zool, 84
• Lane, D.J., 16S/23S Sequencing (1991) Nucleic Acid Technologies in Bacterial Systematics, pp. 115-175. , Wiley, New York, E. Stackebrandt, M. Goodfellow (Eds.)
• Laval-Peuto, M., Construction of the lorica in Ciliata Tintinnina in vivo study of Favella ehrenbergii: variability of the phenotypes during the cycle, biology, statistics, biometry (1981) Protistologica, 17, pp. 249-272
• Laval-Peuto, M., Brownlee, D.C., Identification and systematics of the Tintinnina (Ciliophora): evaluation and suggestions for improvement (1986) Ann Inst Océanogr Paris, 62, pp. 69-84
• Li, Z., Yi, Z., Yang, J., Gong, J., Clamp, J.C., Al-Rasheid, K.A.S., Al-Arifi, S., Song, W., Phylogenetic investigation on five genera of tintinnid ciliates (Ciliophora, Choreotrichia), based on the small subunit ribosomal RNA gene sequences (2009) Prog Nat Sci, 19, pp. 1097-1101
• Lin, S., Zhang, H., Hou, Y., Zhuang, Y., Miranda, L., High-Level diversity of dinoflagellates in the natural environment, revealed by assessment of mitochondrial cox1 and cob genes for dinoflagellate DNA barcoding (2009) Appl Environ Microbiol, 75, pp. 1279-1290
• López-García, P., Moreira, D., Tracking microbial biodiversity through molecular and genomic ecology (2008) Res Microbiol, 159, pp. 67-73
• Lynn, D.H., (2008), ed The Ciliated Protozoa. Characterization, Classification, and Guide to the Literature. Springer Verlag, Dordrecht; Lynn, D.H., Pinheiro, M., A survey of Polymerase Chain Reaction (PCR) amplification studies of unicellular protists using single-cell PCR (2009) J Eukaryot Microbiol, 56, pp. 406-412
• Marande, W., López-García, P., Moreira, D., Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samples (2009) Environ Microbiol, 11, pp. 3179-3188
• McManus, G.B., Katz, L.A., Molecular and morphological methods for identifying plankton: what makes a successful marriage? (2009) J Plankton Res, 31, pp. 1119-1129
• Medinger, R., Nolte, V., Pandey, R.V., Jost, S., Ottenwälder, B., Schlötterer, C., Boenigk, J., Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms (2010) Mol Ecol, 19, pp. 32-40
• Medlin, L.K., Kooistra, W.H.C.F., Methods to estimate the diversity in the marine photosynthetic protist community with illustrations from case studies: a review (2010) Diversity, 2, pp. 973-1014
• Moreira, D., von der Heyden, S., Bass, D., López-García, P., Chao, E., Cavalier-Smith, T., Global eukaryote phylogeny: combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata (2007) Mol Phylogenet Evol, 44, pp. 255-266
• Nebel, M., Pfabel, C., Stock, A., Dunthorn, M., Stoeck, T., Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences (2011) Environ Microbiol Reports, 3, pp. 154-158
• Nylander, J.A.A., MrModeltest Ver. 2 (2004) Evolutionary Biology Centre, , Uppsala University, Sweden
• Ortman, B.D., DNA Barcoding the Medusozoa and Ctenophora (2008) PhD thesis, , University of Connecticut
• Pawlowski, J., Lecroq, B., Short rDNA barcodes for species identification in Foraminifera (2010) J Eukaryot Microbiol, 57, pp. 197-205
• Przyboś, E., Tarcz, S., Greczek-Stachura, M., Surmacz, M., Potekhin, A., Rautian, M., Molecular studies on intraspecific differentiation of Paramecium dodecaurelia, with description of new stands of the species (Protozoa, Ciliophora) (2008) Folia Biol (Kraków), 56, pp. 249-262
• Przyboś, E., Tarcz, S., Greczek-Stachura, M., Surmacz, M., Polymorphism of Paramecium pentaurelia (Ciliophora, Oligohymenophorea) strains revealed by rDNA and mtDNA sequences (2011) Eur J Protistol, 47, pp. 138-143
• Ronquist, F., Huelsenbeck, J.P., MrBayes 3: Bayesian phylogenetic inference under mixed models (2003) Bioinformatics, 19, pp. 1572-1574
• Saitou, N., Nei, M., The neighbor-joining method: a new method for reconstructing phylogenetic trees (1987) Mol Biol Evol, 4, pp. 406-425
• Santoferrara, L., Alder, V., Morphological variability, spatial distribution and abundance of Helicostomella species (Ciliophora, Tintinnina) in relation to environmental factors (Argentine shelf; 40-55°S) (2009) Sci Mar, 73, pp. 701-716
• Snoeyenbos-West, O., Salcedo, T., McManus, G., Katz, L., Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci (2002) Int J Syst Evol Microbiol, 52, pp. 1901-1913
• Sonneborn, T.M., Breeding Systems, Reproductive Methods and Species Problem in Protozoa (1957) The Species Problem, pp. 155-324. , American Association for the Advancement of Science, Washington DC, E. Mayr (Ed.)
• Stamatakis, A., Blagojevic, F., Nikolopoulos, D., Antonopoulos, C., Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM cell (2007) J VLSI Signal Process, 48, pp. 271-286
• Stoeck, T., Bass, D., Nebel, M., Christen, R., Jones, M.D.M., Breiner, H.W., Richards, T.A., Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water (2010) Mol Ecol, 19, pp. 21-31
• Stoeck, T., Behnke, A., Christen, R., Amaral-Zettler, L., Rodriguez-Mora, M.J., Chistoserdov, A., Orsi, W., Edgcomb, V.P., Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities (2009) BMC Biol, 7, p. 72
• Strüder-Kypke, M.C., Lynn, D.H., Sequence analyses of the small subunit rRNA gene confirm the paraphyly of oligotrich ciliates sensu lato and support the monophyly of the subclasses Oligotrichia and Choreotrichia (Ciliophora, Spirotrichea) (2003) J Zool, 260, pp. 87-97
• Strüder-Kypke, M.C., Lynn, D.H., Morphological versus molecular data - Phylogeny of tintinnid ciliates (Ciliophora (2008) Choreotrichia) inferred from small subunit rRNA gene sequences. Denisia, 23, pp. 417-424
• Strüder-Kypke, M.C., Lynn, D.H., Comparative analysis of the mitochondrial cytochrome c oxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker (2010) Syst Biodivers, 8, pp. 131-148
• Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., Kumar, S., MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony methods (2011) Mol Biol Evol
• Tamura, M., Katz, L.A., McManus, G.B., Distribution and diversity of oligotrich and choreotrich ciliates across an environmental gradient in a large temperate estuary (2011) Aquat Microb Ecol, 64, pp. 51-67
• Tarcz, S., Przybos, E., Prajer, M., Greczek-Stachura, M., Intraspecific variation of diagnostic rDNA genes in Paramecium dodecaurelia, P. tredecaurelia and P. quadecaurelia (Ciliophora: Oligohymenophorea) (2006) Acta Protozool, 45, pp. 255-263
• Thompson, G.A., Alder, V.A., Patterns in tintinnid species composition and abundance in relation to hydrological conditions f the southwestern Atlantic during austral spring (2005) Aquat Microb Ecol, 40, pp. 85-101
• Thompson, J., Higgins, D., Gibson, T., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice (1994) Nucleic Acids Res, 22, pp. 4673-4680
• Vollmer, S.V., Palumbi, S.R., Testing the utility of internally transcribed spacer sequences in coral phylogenetics (2004) Mol Ecol, 13, pp. 2763-2772
• Weisse, T., Montagnes, D.J.S., Effect of temperature on inter- and intraspecific isolates of Urotricha (Prostomatida, Ciliophora) (1998) Aquat Microb Ecol, 15, pp. 285-291
• Windsor, J.J., Macfarlane, L., Clark, C.G., Internal Transcribed Spacer dimorphism and diversity in Dientamoeba fragilis (2006) J Eukaryot Microbiol, 53, pp. 188-192
• Woese, C.R., Bacterial evolution (1987) Microbiol Rev, 51, pp. 221-271
• Wylezich, C., Nies, G., Mylnikov, A.P., Tautz, D., Arndt, H., An evaluation of the use of the LSU rRNA D1-D5 domain for DNA-based taxonomy of eukaryotic protists (2010) Protist, 161, pp. 342-352
• Zhang, H., Bhattacharya, D., Lin, S., Phylogeny of dinoflagellates based on mitochondrial cytocrome b and nuclear small subunit rDNA sequence comparisons (2005) J Phycol, 41, pp. 411-420

Citas:

---------- APA ----------

---------- CHICAGO ----------

---------- MLA ----------

---------- VANCOUVER ----------