Abstract:
The conformational analysis of the (S) and (R) diastereoisomers of benzyl 3-deoxy-4S-(β-d-galactopyranosyl)-4-thio-β-d-threo-pentopyranoside S-oxide (1S and 1R, respectively) has been performed by using NMR spectroscopy assisted by molecular modelling methods. The results point out that sulfoxide 1S and 1R display rather different conformational behaviors, 1S being significantly more flexible than 1R. Both sulfoxides have shown to be competitive inhibitors of the β-galactosidase from E. coli, although with different potencies. The key structural features of the molecular recognition process have been characterized. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim
Registro:
Documento: |
Artículo
|
Título: | Diastereomeric Glycosyl Sulfoxides Display Different Recognition Features versus E. coli β-Galactosidase |
Autor: | Colomer, J.P.; Fernández de Toro, B.; Cañada, F.J.; Corzana, F.; Jiménez Barbero, J.; Canales, Á.; Varela, O. |
Filiación: | CIHIDECAR-CONICET-UBA, Department of Organic Chemistry, Exact and Natural Sciences Faculty, University of Buenos Aires, Ciudad Universitaria, Pab. II, Buenos Aires, 1428, Argentina Department of Chemical and Physical Biology, Biological Research Center, Spanish National Research Council (CIB-CSIC), Ramiro de Maeztu 9, Madrid, 28040, Spain Department of Chemistry, Research Center of Chemistry Synthesis, University of La Rioja, Madre de Dios 53, Logroño, 26006, Spain CIC bioGUNE, Bizkaia Science and Technology Park, Building 801A, Derio, 48160, Spain IKERBASQUE, Basque Foundation for Science, Bilbao, 48009, Spain Departament of Organic Chemistry II, Faculty of Science & Technology, University of the Basque Country, Leioa, 48940, Spain Department of Organic Chemistry I, Chemical Sciences Faculty, Complutense University, Madrid, 28040, Spain
|
Palabras clave: | Conformation analysis; Glycomimetics; Glycosidases; Molecular recognition |
Año: | 2016
|
Volumen: | 2016
|
Número: | 30
|
Página de inicio: | 5117
|
Página de fin: | 5122
|
DOI: |
http://dx.doi.org/10.1002/ejoc.201600835 |
Título revista: | European Journal of Organic Chemistry
|
Título revista abreviado: | Eur. J. Org. Chem.
|
ISSN: | 1434193X
|
CODEN: | EJOCF
|
Registro: | https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_1434193X_v2016_n30_p5117_Colomer |
Referencias:
- Driguez, H., (1998) Glycoscience Synthesis of Substrate Analogs and Mimetics, pp. 85-116. , in, (Eds., H. Driguez, J. Thiem, Springer, Berlin–Heidelberg
- Driguez, H., (2001) ChemBioChem, 2, pp. 311-318
- Ritchie, G.E., Moffatt, B.E., Sim, R.B., Morgan, B.P., Dwek, R.A., Rudd, P.M., (2002) Chem. Rev., 102, pp. 305-320
- Wormald, M.R., Petrescu, A.J., Pao, Y.-L., Glithero, A., Elliott, T., Dwek, R.A., (2002) Chem. Rev., 102, pp. 371-386
- Yuasa, H., Saotome, C., Kanie, O., (2002) Trends Glycosci. Glycotechnol., 14, pp. 231-251
- Wen, X., Yuan, Y., Kuntz, D.A., Rose, D.R., Pinto, B.M., (2005) Biochemistry, 44, pp. 6729-6737
- Henrissat, B., Bairoch, A., (1993) Biochem. J., 293, pp. 781-788
- Jacobson, R.H., Zhang, X.J., DuBose, R.F., Matthews, B.W., (1994) Nature, 369, pp. 761-766
- Juers, D.H., Heightman, T.D., Vasella, A., McCarter, J.D., Mackenzie, L., Withers, S.G., Matthews, B.W., (2001) Biochemistry, 40, pp. 14781-14794
- Dugdale, M.L., Vance, M.L., Wheatley, R.W., Driedger, M.R., Nibber, A., Tran, A., Huber, R.E., (2010) Biochem. Cell Biol., 88, pp. 969-979
- Witczak, Z.J., (1999) Curr. Med. Chem., 6, pp. 165-178
- Witczak, Z.J., Culhane, J.M., (2005) Appl. Microbiol. Biotechnol., 69, pp. 237-244
- Witczak, Z.J., (2013) Phosphorus Sulfur Silicon Relat. Elem., 188, pp. 413-417
- Biarnés, X., Ardèvol, A., Planas, A., Rovira, C., Laio, A., Parrinello, M., (2007) J. Am. Chem. Soc., 129, pp. 10686-10693
- Gloster, T.M., Davies, G.J., (2010) Org. Biomol. Chem., 8, pp. 305-320
- Lammerts van Bueren, A., Ardèvol, A., Fayers-Kerr, J., Luo, B., Zhang, Y., Sollogoub, M., Blériot, Y., Davies, G.J., (2010) J. Am. Chem. Soc., 132, pp. 1804-1806
- Martin, A., Arda, A., Désiré, J., Martin Mingot, A., Probst, N., Sinaÿ, P., Jiménez Barbero, J., Blériot, Y., (2016) Nat. Chem., 8, pp. 186-191
- Hadfield, A.T., Harvey, D.J., Archer, D.B., MacKenzie, D.A., Jeenes, D.J., Radford, S.E., Lowe, G., Johnson, L.N., (1994) J. Mol. Biol., 243, pp. 856-872
- Pabba, J., Vasella, A., (2006) Helv. Chim. Acta, 89, pp. 2006-2019
- Rempel, B.P., Withers, S.G., (2008) Glycobiology, 18, pp. 570-586
- Espinosa, J.F., Montero, E., Vian, A., García, J.L., Dietrich, H., Schmidt, R.R., Martín-Lomas, M., Jiménez-Barbero, J., (1998) J. Am. Chem. Soc., 120, pp. 1309-1318
- García-Herrero, A., Montero, E., Muñoz, J.L., Espinosa, J.F., Vián, A., García, J.L., Asensio, J.L., Jiménez-Barbero, J., (2002) J. Am. Chem. Soc., 124, pp. 4804-4810
- Vasella, A., Davies, G.J., Böhm, M., (2002) Curr. Opin. Chem. Biol., 6, pp. 619-629
- Calle, L., Roldós, V., Cañada, F.J., Uhrig, M.L., Cagnoni, A.J., Manzano, V.E., Varela, O., Jiménez-Barbero, J., (2013) Chem. Eur. J., 19, pp. 4262-4270
- Colomer, J.P., Canales Mayordomo, M.Á., Fernández de Toro, B., Jiménez-Barbero, J., Varela, O., (2015) Eur. J. Org. Chem., pp. 1448-1455
- Witczak, Z.J., Kaplon, P., Dey, P.M., (2003) Carbohydr. Res., 338, pp. 11-18
- Colomer, J.P., Manzano, V.E., Varela, O., (2013) Eur. J. Org. Chem., pp. 7343-7353
- (2012) MSpin, , version 8.1.0-11315, Mestrelab Research S.L
- Kice, J.L., (1981) Advances in Physical Organic Chemistry, 17, pp. 65-181. , in, (Eds., V. Gold, D. Bethell, Academic Press Inc., London
- Davis, F.A., Jenkins, L.A., Billmers, R.L., (1986) J. Org. Chem., 51, pp. 1033-1040
- Goto, K., Holler, M., Okazaki, R., (1997) J. Am. Chem. Soc., 119, pp. 1460-1461
- Gildersleeve, J., Pascal, R.A., Kahne, D., (1998) J. Am. Chem. Soc., 120, pp. 5961-5969
- Block, E., Gillies, J.Z., Gillies, C.W., Bazzi, A.A., Putman, D., Revelle, L.K., Wang, D., Zhang, X., (1996) J. Am. Chem. Soc., 118, pp. 7492-7501
- Block, E., (2010) Garlic and Other Alliums: The Lore and The Science, , in, The Royal Society of Chemistry, Albany, New York, USA
- Matthews, B.W., (2005) C. R. Biol., 328, pp. 549-556
- (2013) MacroModel, , version 10.0, Schrödinger, LLC, New York, NY
- Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Montgomery, J.A., Jr., Pople, J.A., (2004) Gaussian, , 03, revision E.01, Gaussian, Inc., Wallingford, CT
- Csonka, G.I., (2002) THEOCHEM, 584, pp. 1-4
- Case, T.A.D.D.A., Cheatham, T.E., III, Simmerling, C.L., Wang, J., Duke, R.E., Luo, R., Walker, R.C., Kollman, P.A., (2012) AMBER 12, , University of California, San Francisco
Citas:
---------- APA ----------
Colomer, J.P., Fernández de Toro, B., Cañada, F.J., Corzana, F., Jiménez Barbero, J., Canales, Á. & Varela, O.
(2016)
. Diastereomeric Glycosyl Sulfoxides Display Different Recognition Features versus E. coli β-Galactosidase. European Journal of Organic Chemistry, 2016(30), 5117-5122.
http://dx.doi.org/10.1002/ejoc.201600835---------- CHICAGO ----------
Colomer, J.P., Fernández de Toro, B., Cañada, F.J., Corzana, F., Jiménez Barbero, J., Canales, Á., et al.
"Diastereomeric Glycosyl Sulfoxides Display Different Recognition Features versus E. coli β-Galactosidase"
. European Journal of Organic Chemistry 2016, no. 30
(2016) : 5117-5122.
http://dx.doi.org/10.1002/ejoc.201600835---------- MLA ----------
Colomer, J.P., Fernández de Toro, B., Cañada, F.J., Corzana, F., Jiménez Barbero, J., Canales, Á., et al.
"Diastereomeric Glycosyl Sulfoxides Display Different Recognition Features versus E. coli β-Galactosidase"
. European Journal of Organic Chemistry, vol. 2016, no. 30, 2016, pp. 5117-5122.
http://dx.doi.org/10.1002/ejoc.201600835---------- VANCOUVER ----------
Colomer, J.P., Fernández de Toro, B., Cañada, F.J., Corzana, F., Jiménez Barbero, J., Canales, Á., et al. Diastereomeric Glycosyl Sulfoxides Display Different Recognition Features versus E. coli β-Galactosidase. Eur. J. Org. Chem. 2016;2016(30):5117-5122.
http://dx.doi.org/10.1002/ejoc.201600835