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Zanella, C.; Rizzi, B.; Melani, C.; Campana, M.; Bourgine, P.; Mikula, K.; Peyriéras, N.; Sarti, A. "Segmentation of cells from 3-D confocal images of live zebrafish embryo" (2007) 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07:6027-6030
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Abstract:

In this paper, we use partial-differential-equationbased segmentation to accurately extract the shapes of membranes and nuclei from time lapse confocal microscopy images, taken throughout early Zebrafish embryogenesis. This strategy is a prerequisite for an accurate quantitative analysis of cell shape and morphodynamics during organogenesis and is the basis for an integrated understanding of biological processes. This data will also serve for the measurement of the variability between individuals in a population. The segmentation of cellular structures is achieved by first using an edge-preserving image filtering method for noise reduction and then applying an algorithm for cell shape reconstruction based on the Subjective Surfaces technique. © 2007 IEEE.

Registro:

Documento: Conferencia
Título:Segmentation of cells from 3-D confocal images of live zebrafish embryo
Autor:Zanella, C.; Rizzi, B.; Melani, C.; Campana, M.; Bourgine, P.; Mikula, K.; Peyriéras, N.; Sarti, A.
Ciudad:Lyon
Filiación:Departimento di Elettronica, Informatica e Sistemistica (DEIS), Bologna University, Italy
Facultad de Ciencias Exactas y Naturales, Buenos Aires University, Argentina
Centre de Recherche en Epistémologie Appliquée, CNRS, Ecole Polytechnique, Paris, France
Department of Mathematics, Slovak University of Technology, Bratislava, Slovakia
DEPSN, CNRS, Institut de Neurobiologie Alfred Fessard, Gif-sur-Yvette, France
Palabras clave:Cell membranes; Image reconstruction; Partial differential equations; Three dimensional; 3D confocal images; Live zebrafish embryo; Time lapse confocal microscopy images; Zebrafish embryogenesis; Image segmentation
Año:2007
Página de inicio:6027
Página de fin:6030
DOI: http://dx.doi.org/10.1109/IEMBS.2007.4353722
Título revista:29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07
Título revista abreviado:Annu Int Conf IEEE Eng Med Biol Proc
ISSN:05891019
CODEN:CEMBA
Registro:https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_05891019_v_n_p6027_Zanella

Referencias:

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  • Kimmel, C.B., Ballard, W.W., Kimmel, S.R., Ullmann, B., Schilling, T.F., Stages of embryonic development of the zebrafish (1995) Dev. Dyn, 203, pp. 253-310
  • Rizzi, B., 3D Zebra Fish Embryo Images Filtering by Nonlinear Partial Differential Equations 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, , submitted for publication
  • Sarti, A., Malladi, R., Sethian, J.A., Subjective Surfaces: A Method for Completing Missing Boundaries (2000) Proceedings of the National Academy of Sciences of the United States of America, 12, pp. 6258-6263
  • Sarti, A., Malladi, R., Sethian, J.A., Subjective Surfaces: A Geometric Model for Boundary Completion (2002) International Journal of Computer Vision, 46, pp. 201-221
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  • Campana, M., A Framework for 4D-Biomedical Image Processing, Visualization and Analysis 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, , submitted for publication
  • Ballard, D., Generalizing the Hough Transform to Detect Arbitrary Shapes (1981) Pattern Recognition, 13, pp. 111-122
  • Melani, C., Tracking cells in a live zebrafish embryo 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, , submitted for publicationA4 - ACIES, Research Promotion and Management Consulting; EOARD, European Office of Aerospace R and D; Grand Lyon; NSF, National Science Foundation; Philips Research Europe; Philips Research North America

Citas:

---------- APA ----------
Zanella, C., Rizzi, B., Melani, C., Campana, M., Bourgine, P., Mikula, K., Peyriéras, N.,..., Sarti, A. (2007) . Segmentation of cells from 3-D confocal images of live zebrafish embryo. 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07, 6027-6030.
http://dx.doi.org/10.1109/IEMBS.2007.4353722
---------- CHICAGO ----------
Zanella, C., Rizzi, B., Melani, C., Campana, M., Bourgine, P., Mikula, K., et al. "Segmentation of cells from 3-D confocal images of live zebrafish embryo" . 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07 (2007) : 6027-6030.
http://dx.doi.org/10.1109/IEMBS.2007.4353722
---------- MLA ----------
Zanella, C., Rizzi, B., Melani, C., Campana, M., Bourgine, P., Mikula, K., et al. "Segmentation of cells from 3-D confocal images of live zebrafish embryo" . 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07, 2007, pp. 6027-6030.
http://dx.doi.org/10.1109/IEMBS.2007.4353722
---------- VANCOUVER ----------
Zanella, C., Rizzi, B., Melani, C., Campana, M., Bourgine, P., Mikula, K., et al. Segmentation of cells from 3-D confocal images of live zebrafish embryo. Annu Int Conf IEEE Eng Med Biol Proc. 2007:6027-6030.
http://dx.doi.org/10.1109/IEMBS.2007.4353722