Abstract:
The role of inter- and intramolecular hydrogen bonding is very important for defining the reactivity of a great diversity of structures. In aromatic nucleophilic substitutions (SNAr) with amines in aprotic solvents, the attendance of hydrogen bond interactions (solute-solute and solute-solvent) has been proposed to understand kinetic results. In order to hold up recently reported experimental results on SNAr, in this paper we study structural and electronic properties of the aromatic polyamine 2-guanidinobenzimidazole, the aprotic polar solvent molecule dimethylsulphoxide and their interactions. Semi-empirical and ab-initio density functional theory calculations were performed to investigate, in particular, the possibility of hydrogen bond formation. It is found that 2-guanidinobenzimidazole presents intra- and intermolecular hydrogen bond formation leading to homo 2-GB and mixed solute-solvent dimers; being the latter energetically slightly more favorable than the former one. © 2008 Elsevier B.V. All rights reserved.
Registro:
Documento: |
Artículo
|
Título: | Hydrogen bonding in aromatic polyamine 2-guanidinobenzimidazole: Study based on density functional theory calculations |
Autor: | Bergero, F.; Alvaro, C.E.S.; Nudelman, N.S.; Ramos de Debiaggi, S. |
Filiación: | Departamento de Física, Facultad de Ingeniería, Universidad Nacional del Comahue, Buenos Aires 1400, 8300 Neuquen, Argentina Departamento de Química, Facultad de Ingeniería, Universidad Nacional del Comahue, Buenos Aires 1400, 8300 Neuquen, Argentina Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, 1428 Buenos Aires, Argentina Departamento de Física, Facultad de Ingeniería, Universidad Nacional del Comahue, Buenos Aires 1400, 8300 Neuquen, Argentina
|
Palabras clave: | 2-Guanidinobenzimidazole; Ab-initio calculations; Aromatic nucleophilic substitution; Hydrogen bonded nucleophiles; Mixed-aggregates |
Año: | 2009
|
Volumen: | 896
|
Número: | 1-3
|
Página de inicio: | 18
|
Página de fin: | 24
|
DOI: |
http://dx.doi.org/10.1016/j.theochem.2008.10.045 |
Título revista: | Journal of Molecular Structure: THEOCHEM
|
Título revista abreviado: | J. Mol. Struct. THEOCHEM
|
ISSN: | 01661280
|
CODEN: | THEOD
|
Registro: | https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_01661280_v896_n1-3_p18_Bergero |
Referencias:
- Scheiner, S., (1997) Hydrogen Bonding: A Theoretical Perspective, , Oxford University Press, New York pp. 292-365
- Desiraju, G.R., Steiner, T., (1999) The Weak Hydrogen Bond in Structural Chemistry and Biology, , Oxford University Press Inc., New York
- Jeffrey, G.A., (1997) An Introduction to Hydrogen Bonding, , Oxford University Press, New York (Chapters 5 and 11)
- Desiraju, G.R., (1989) Crystal Engineering - The Design of Organic Solids, , Elsevier, Amsterdam
- Pimentel, G.C., McClellan, S.A.L., (1960) The Hydrogen Bond, , W.H. Freeman and Co., San Francisco, CA
- Ki Rhee, S., Hoon Kim, S., Lee, S., Young Lee, S., (2004) J. Chem. Phys., 297, p. 21
- Solimannejad, M., Scheiner, S., (2006) Chem. Phys. Lett., 424, p. 1
- Pejov, L., Solimannejad, M., Stefov, V., (2006) Chem. Phys., 323, p. 259
- Grabowski, S.J., Pfitzner, A., Zabel, M., Dubis, A.T., Palusiak, M., (2004) J. Phys. Chem. B., 108, p. 1831
- Jeffrey, G.A., Saenger, W., (1991) Hydrogen Bonding in Biological Structures, , Springer-Verlag, Berlin
- Hobza, P., Havlas, Z., (2000) Chem. Rev., 100, p. 4253. , and references therein
- Grabowski, S.J., Robinson, T.L., Leszczynski, J., (2004) Chem. Phys. Lett., 386, p. 44
- Bureiko, S.F., Golubev, N.S., Pihlaja, K., (1999) J. Mol. Struct., 480-481, p. 297
- Raczynska, E.D., Maria, P.-C., Gal, J.-F., Decouzon, M., (1994) J. Phys. Org. Chem., 7, p. 725. , and references therein
- Desiraju, G.R., (1996) Acc. Chem. Res., 29, p. 441
- Lehn, J.M., (1995) Supramolecular Chemistry: Concepts and Perspectives, , VCH, Weinheim
- Yates, J.R., Pham, T.N., Pickard, C.J., Mauri, F., Amado, A.M., Gil, A.M., Brown, S.P., (2005) J. Am. Chem. Soc., 127, p. 10216. , and references therein
- Buemi, G., Zuccarello, F., (2004) Chem. Phys., 306, p. 115
- Gu, Y., Kar, Y.S., Scheiner, S.J., (2000) J. Mol. Struct., 552, p. 17
- Nudelman, N.S., (1996) The Chemistry of Amino, Nitroso, Nitro and Related Groups, pp. 1215-1300. , Patai S. (Ed), Wiley, Chichester (Chapter 29)
- Nudelman, N.S., Alvaro, C.E.S., Yankelevich, J.S., (1997) J. Chem. Soc. Perkin Trans., 2, p. 2125. , and references cited therein
- Forlani, L., (1996) The Chemistry of Amino, Nitroso, Nitro and Related Groups, pp. 423-477. , Patai S. (Ed), Wiley, Chichester (Chapter 10)
- Forlani, L., (1999) J. Phys. Org. Chem., 12, p. 417
- Nudelman, N.S., Montserrat, J.M., (1990) J. Chem. Soc. Perkin Trans, 2, p. 1073
- Nudelman, N.S., (1989) J. Phys. Org. Chem., 2, p. 1
- Alvaro, C.E.S., Nudelman, N.S., (2003) Arkivoc x, p. 95
- Nudelman, N.S., Alvaro, C.E.S., Savini, M., Nicotra, V., Yankelevich, J.S., (1999) Collect. Czech. Chem. Commun., 64, p. 1583
- Nudelman, N.S., Savini, M., Alvaro, C.E.S., Nicotra, V., Yankelevich, J.S., (1999) J. Chem. Soc. Perkin Trans, 2, p. 1627
- Alvaro, C.E.S., Nudelman, N.S., (2005) J. Phys. Org. Chem., 18, p. 880
- C.E.S. Alvaro, S. Ramos de Debiaggi, A.D. Ayala, N.S. Nudelman, 9th Latin American Conference on Physical Organic Chemistry, CLAFQO, October 2007, Los Cocos, Córdoba, Argentina; Parr, R.G., Yang, W., (1989) Density-Functional Theory of Atoms and Molecules, , Oxford University Press, New York (Chapter 3)
- Hernández-García, R.M., Barba-Behrens, N., Salcedo, R., Höjer, G., (2003) J. Mol. Struct. (Theochem), 637, p. 55
- M.J. Frisch, M.W. Wong, C. Gonzalez, J.A. Pople, Gaussian 03 Rev. B. 01, Gaussian Inc., Pittsburgh PA, 2003; Dewar, M.S.J., Zoebisch, E.G., Healy, R.F., Stewart, J.P., (1985) J. Am. Chem. Soc., 107, p. 3902
- Becke, A.D., (1993) J. Chem. Phys., 98, p. 5648
- Lee, C., Yang, W., Parr, R.G., (1988) Phys. Rev. B, 37, p. 785
- Orozco, M., Luque, J., (2000) J. Chem. Rev., 100, p. 4187
- González, L., Mó, O., Yañez, M., Elguero, J., (1996) J. Mol. Struct. (Theochem), 371, p. 1
- González, L., Mó, O., Yañez, M., (1997) J. Phys. Chem. A, 101, p. 9710
- González, L., Mó, O., Yañez, M., (1998) J. Chem. Phys., 109, p. 139
- Luzynski, M., Rusinska-Poszak, D., Mack, H.G., (1997) J. Phys. Chem. A, 101, p. 1542
- Luzynski, M., Rusinska-Poszak, D., Mack, H.G., (1998) J. Phys. Chem., 102, p. 2899
- González, L., Mó, O., Yañez, M., (1999) J. Org. Chem., 64, p. 2314
- Parthasarathi, R., Subramanian, V., (2006) Hydrogen Bonding, pp. 1-50. , Grabowski S.J. (Ed), New Insight, Springer (Chapter 1)
- Bader, R.F.W., (1994) Atoms in Molecules: A Quantum Theory, , Oxford University Press, USA
- Boys, S.F., Bernardi, F., (1970) Mol. Phys., 19, p. 553
- Steel, P.J., (1991) J. Heterocyclic Chem., 28, p. 1817
- Bergero, F., Alvaro, C.E.S., Nudelman, N.S., Ramos de Debiaggi, S., (2006) Anales de la Asociación Física Argentina, 18, p. 52
- Andrade-López, N., Ariza-Castolo, A., Contreras, R., Vásquez-Olmos, A., Barba Behrens, N., Tlahuext, H., (1997) Heteroatom. Chem., 8, p. 397
Citas:
---------- APA ----------
Bergero, F., Alvaro, C.E.S., Nudelman, N.S. & Ramos de Debiaggi, S.
(2009)
. Hydrogen bonding in aromatic polyamine 2-guanidinobenzimidazole: Study based on density functional theory calculations. Journal of Molecular Structure: THEOCHEM, 896(1-3), 18-24.
http://dx.doi.org/10.1016/j.theochem.2008.10.045---------- CHICAGO ----------
Bergero, F., Alvaro, C.E.S., Nudelman, N.S., Ramos de Debiaggi, S.
"Hydrogen bonding in aromatic polyamine 2-guanidinobenzimidazole: Study based on density functional theory calculations"
. Journal of Molecular Structure: THEOCHEM 896, no. 1-3
(2009) : 18-24.
http://dx.doi.org/10.1016/j.theochem.2008.10.045---------- MLA ----------
Bergero, F., Alvaro, C.E.S., Nudelman, N.S., Ramos de Debiaggi, S.
"Hydrogen bonding in aromatic polyamine 2-guanidinobenzimidazole: Study based on density functional theory calculations"
. Journal of Molecular Structure: THEOCHEM, vol. 896, no. 1-3, 2009, pp. 18-24.
http://dx.doi.org/10.1016/j.theochem.2008.10.045---------- VANCOUVER ----------
Bergero, F., Alvaro, C.E.S., Nudelman, N.S., Ramos de Debiaggi, S. Hydrogen bonding in aromatic polyamine 2-guanidinobenzimidazole: Study based on density functional theory calculations. J. Mol. Struct. THEOCHEM. 2009;896(1-3):18-24.
http://dx.doi.org/10.1016/j.theochem.2008.10.045