Abstract:
We have studied the hydration and diffusion of the hydroxyl radical O H0 in water using classical molecular dynamics. We report the atomic radial distribution functions, hydrogen-bond distributions, angular distribution functions, and lifetimes of the hydration structures. The most frequent hydration structure in the O H0 has one water molecule bound to the O H0 oxygen (57% of the time), and one water molecule bound to the O H0 hydrogen (88% of the time). In the hydrogen bonds between the O H0 and the water that surrounds it the O H0 acts mainly as proton donor. These hydrogen bonds take place in a low percentage, indicating little adaptability of the molecule to the structure of the solvent. All hydration structures of the O H0 have shorter lifetimes than those corresponding to the hydration structures of the water molecule. The value of the diffusion coefficient of the O H0 obtained from the simulation was 7.1× 10-9 m2 s-1, which is higher than those of the water and the O H-. © 2005 American Institute of Physics.
Registro:
Documento: |
Artículo
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Título: | Classical molecular-dynamics simulation of the hydroxyl radical in water |
Autor: | Campo, M.G.; Grigera, J.R. |
Filiación: | Departamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de La Pampa, Santa Rosa, Argentina Instituto de Física de Líquidos y Sistemas Biológicos (IFLYSIB), Universidad Nacional de la Plata (UNLP), Comisión de Investigaciones Científicas de la Provincia de Buenos Aires (CIC), B1900BTE, La Plata, Argentina
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Idioma: |
Inglés
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Palabras clave: | Angular distribution functions; Atomic radial distribution functions; Hydroxyl radicals; Water molecules; Computer simulation; Diffusion; Hydrogen bonds; Molecular dynamics; Solvents; Water; Free radicals |
Año: | 2005
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Volumen: | 123
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Número: | 8
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Número de artículo: | 084507
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DOI: |
http://dx.doi.org/10.1063/1.2013253 |
Título revista: | Journal of Chemical Physics
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Título revista abreviado: | J Chem Phys
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ISSN: | 00219606
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CODEN: | JCPSA
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PDF: | https://bibliotecadigital.exactas.uba.ar/download/paper/paper_00219606_v123_n8_p_Campo.pdf |
Registro: | https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00219606_v123_n8_p_Campo |
Referencias:
- Chaychian, M., Al-Sheikhly, M., Silverman, J., McLaughlin, W.L., (1998) Radiat. Phys. Chem., 53, p. 145
- Gårdfeldt, K., Sommar, J., Strömberg, D., Feng, X.B., (2001) Atmos. Environ., 35, p. 3039
- Von Sonntag, C., (1987) The Chemical Bases of Radiation Biology, , Taylor and Francis, London
- Andrews, H.L., (1974) Radiation Biophysics, , Prentice-Hall, Englewood Cliffs, NJ
- Hamza, A., Broch, H., Vasilexcu, D., (1999) J. Mol. Struct., 491, p. 237
- Cooper, P.D., Kjaergaard, H.G., Langford, V.S., McKinley, A.J., Quickenden, T.I., Schofield, D.P., (2003) J. Am. Chem. Soc., 125, p. 6048
- Hamad, S., Lago, S., Mejías, J.A., (2002) J. Phys. Chem., 106, p. 9104
- Cabral Do Couto, P., Guedes, R.C., Costa Cabral, B.J., (2003) J. Chem. Phys., 119, p. 7344
- Roeselová, M., Jungwirth, P., Tobias, D.J., Gerber, R.B., (2003) J. Phys. Chem., 107, p. 12690
- Roeselová, M., Vieceli, J., Dang, L.X., Garrett, B.C., Tobías, D.J., (2004) J. Am. Chem. Soc., 126, p. 16308
- Vácha, R., Slavíček, P., Mucha, M., Finlayson-Pitts, B.J., Jungwirth, P., (2004) J. Phys. Chem. A, 108, p. 11573
- Vassilev, P., Louwerse, M.J., Baerends, E.J., (2004) Chem. Phys. Lett., 398, p. 212
- Vande Vondele, J., Sprik, M., (2005) Phys. Chem. Chem. Phys., 7, p. 1363
- Khalack, J.M., Lyubartsev, A.P., (2005) J. Phys. Chem. A, 109, p. 378
- Cysewski, P., (1999) J. Mol. Struct., 466, p. 49
- Vasilescu, D., Broch, H., Hamza, A., (2001) J. Mol. Struct., 538, p. 133
- Campo, M.G., Grigera, J.R., (2004) Mol. Simul., 30, p. 537
- (1996) GROMOS 96, Groningen Molecular Simulation Package, , Biomos Nv., Zurich, Groningen
- Berendsen, H.J.C., Grigera, J.R., Straasma, T.P., (1987) J. Phys. Chem., 91, p. 6269
- Berendsen, H.J.C., Postma, J.P.M., Van Gunsteren, W.F., Di Nola, A., Haak, J.R., (1984) J. Chem. Phys., 81, p. 3684
- Grigera, J.R., Kalko, S.G., (1996) Langmuir, 12, p. 154
- Samoilov, O.Ya., (1965) Structure of Aqueous Solutions and the Hydration of Ions, , Consultant Bureau, New York
- Eisenberg, D., Kauzmann, W., (1969) The Structure and Properties of Water, , Oxford University Press, New York
Citas:
---------- APA ----------
Campo, M.G. & Grigera, J.R.
(2005)
. Classical molecular-dynamics simulation of the hydroxyl radical in water. Journal of Chemical Physics, 123(8).
http://dx.doi.org/10.1063/1.2013253---------- CHICAGO ----------
Campo, M.G., Grigera, J.R.
"Classical molecular-dynamics simulation of the hydroxyl radical in water"
. Journal of Chemical Physics 123, no. 8
(2005).
http://dx.doi.org/10.1063/1.2013253---------- MLA ----------
Campo, M.G., Grigera, J.R.
"Classical molecular-dynamics simulation of the hydroxyl radical in water"
. Journal of Chemical Physics, vol. 123, no. 8, 2005.
http://dx.doi.org/10.1063/1.2013253---------- VANCOUVER ----------
Campo, M.G., Grigera, J.R. Classical molecular-dynamics simulation of the hydroxyl radical in water. J Chem Phys. 2005;123(8).
http://dx.doi.org/10.1063/1.2013253